BAC Information

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BAC

Clone NameMSMg01-383I18
ChromosomeX (Build37)
Map Location 4,768,175 - 4,768,618
singlet/doubletsinglet
Overlap geneLOC100043935
Upstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724
Downstream geneLOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383I18.T7 (MSMg01no383_i18.b1)MSMg01-383I18.TJ (MSMg01no383_i18.g1)
ACCAG487191AG487192
length790780
length of high quality
(start - end)
444 (65 - 508)444 (69 - 512)
definitionCHROMAT_FILE: MSMg01no383_i18.b1 PHD_FILE: MSMg01no383_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:37 2005CHROMAT_FILE: MSMg01no383_i18.g1 PHD_FILE: MSMg01no383_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
TATTTAGATCTCCATCAAATTTTTAAGATGGATGATTTGTTTTTCTTGAC
ATCTTCAGTTCTTTACATAGTTTTCATATTAGTCCTCTATCAGATGTGGA
GTTGGTGAAAATATTTTCCAATTCTGTAAGCTGCCTTCTTGATGGAGTGA
TAATGTCCTTTGCTTTACACAAGCCCTTTTGTTTCATGAGGTACCATTTA
TTCGTTTTTTTTTTTAAGTCTCACTTCCTGGCCTAAAGGTGTTCTGCTTA
GAAAGTCTTCCATGCCAATGAGTTCAGTGCTATTCACCACTTTCTCTTCT
ATCACACCAGTGTCTCTGGTTTTATGTTTAGGTCTTTGATTTTCTTGTTG
GTTTCTTTTTTGGGGGGCAGGATGCTAAGTGGATCTATTTGCATTCCTGT
GACCAGCACCATTTGCCAAAGTTGTCCTTTTTGCAGTGTGTATTTCTGAC
TTCTTTATCAAAAAGAAGGTGCCCATAATTGTAACGATTTCTCTATGTCT
ACAATTATGTTTCATGTTTCATAAATCTGTCTGGGTTTGTGGCAACAAAA
ATTTTGCTTTTATTAATTCAGAATCAAAAACAGAATCCCTATGTCTTTCC
CATTGTAGAAAAAACTTCCTCCTGTATTTTAACTTGGAAAGCAGGATAAG
GGGTATCTTTCCCCCCGGCCTCTTTGTTTGGTTGGGAAGGTTTTTAAATT
CCACTGTGAATTTGTGGGGCTTCCCCTTTTCTGTGGGGCA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAACCTGAAGAGAGCAGAGTGAGAAATTGT
TCAGGAGATTGCAGGTTCTCTCAGAGGGAAACAAAGTGCTATGAATATGT
GAGTGCAGCTTTGCACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGC
TGAGGACAGATTGCAATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTC
GAGTTGAGGATTAACCTGTTAGTGCAGGTGACTGCAGGGGCCAGGGAAGG
GACCTGGGCAAATAAGTGCAGGAGCCTTCAGAAGACTAGATTATGTGGGG
ACAGTGGGCTATACACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGA
ACTCTAGTAGAACCTGATGGGTGGCAATTCCCACCTACATGGGACAGAAG
GCGTTCCCTCATGTCTTCTGGCCCCCTGGCTCCTGTTGAATTTACCACCC
CCACATCCCCCACAAGAGAGGATAGTGGCTAGCAGTCATGTACACAATGT
CCCAAGCTTCTGACCTTCAGGCTAGACTTCTCCCAGTACCTAGCAACAAC
AAGTTAACAAGTCCTTATAAGAGGGGCACTTGGCCCCCCCTCCCCCCCCT
TAAGCTTTTACTTTCTTAAATCCCCCCCTTAATCCCCTCCCCTTAAACTT
TTAGACTTTTAATTTCTTTAAAGCCCTCTCAAAGACTTTCTCCTCTTTAA
CCCTTCCTTTTCTTAATTTTCATAACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_i18.g1 MSMg01no383_i18.g1 CHROMAT_FILE:
MSMg01no383_i18.g1 PHD_FILE: MSMg01no383_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:37 2005
         (444 letters)



>mm_chrX_4767975_4768818
          Length = 844

 Score =  768 bits (397), Expect = 0.0
 Identities = 433/445 (97%), Gaps = 2/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaacctgaagagagcagagtgagaaattgttcaggagattgcaggttctctcagaggg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctcagaggg 260

                                                                       
Query: 61  aaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcctgtgagt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaagtgctatgaatatgtgtgtgcagctttgcacagaggccattgtgcctgtgagt 320

                                                                       
Query: 121 tcatgttcctgctgaggacagattgcaatggagacaa-aagtgtaggtgcctgctgatgt 179
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 321 tcatgttcctgctgaggacagattgcaatggaga-aagaagtgtaggtgcctgctgatgt 379

                                                                       
Query: 180 ctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaagggacctgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaagggacctgg 439

                                                                       
Query: 240 gcaaataagtgcaggagccttcagaagactagattatgtggggacagtgggctatacaca 299
           |||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||
Sbjct: 440 gcaaataagtgcaggagccttcagaagacttggttatgtggggacattgggctaaacaca 499

                                                                       
Query: 300 gacaagctggtctccagttgagttgaggtctgaactctagtagaacctgatgggtggcaa 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 gacaagctggtctccagttgagttgaggtctgaactctagtagaacttgatgggtggcaa 559

                                                                       
Query: 360 ttcccacctacatgggacagaaggcgttccctcatgtcttctggccccctggctcctgtt 419
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 ttcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggctcctgtt 619

                                    
Query: 420 gaatttaccacccccacatccccca 444
           ||| ||||||||||||||| |||||
Sbjct: 620 gaagttaccacccccacattcccca 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)