Query= MSMg01no386_a17.b1 MSMg01no386_a17.b1 CHROMAT_FILE:
MSMg01no386_a17.b1 PHD_FILE: MSMg01no386_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:46 2005
(668 letters)
>mm_chrX_55163398_55164464
Length = 1067
Score = 1237 bits (640), Expect = 0.0
Identities = 658/664 (99%), Gaps = 1/664 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttgatgaccgtgataccacttctcacttgtaaattccttgagggcacaggc 64
||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattctttttgaagaatgtgataccacttctcgcttgtaaattccttgagggcacaggc 264
Query: 65 catgtcttataggtctttgtatctcacagagcatctaaataattactagctgtgatagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgtcttataggtctttgtatctcacagagcatctaaataattactagctgtgatagca 324
Query: 125 gtgttcaataaataacggtggaaggaagggttgaccacaggagaggagggatatgaaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgttcaataaataacggtggaaggaagggttgaccacaggagaggagggatatgaaata 384
Query: 185 ttttcaaaagcagtaaaaagggtagttgaataaaattcaaaacctactttttaagaacat 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttc-aaagcagtaaaaagggtagttgaataaaattcaaaacctactttttaagaacat 443
Query: 245 tattttaggtcaatcatgaatctaaatatttcaaaataaattgaatttacattttgccaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattttaggtcaatcatgaatctaaatatttcaaaataaattgaatttacattttgccaa 503
Query: 305 ttcacattttttttacttatgaaattttagtttttaatatgcacggaaatgtttatagcc 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcacattttttttacttacgaaattttagtttttaatatgcacggaaatgtttatagcc 563
Query: 365 cttttgaacttttatttatatttattttacatttctctagctttccttttgaaaattgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttttgaacttttatttatatttattttacatttctctagctttccttttgaaaattgta 623
Query: 425 aagctacaaaaacaaacatatatagcttttatctcgctgtatcagttgttaatacgtggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagctacaaaaacaaacatatatagcttttatctcgctgtatcagttgttaatacgtggc 683
Query: 485 cccatggatctcacccaggtattaaataattaaaaagtggagcagttcagtgacagagtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cccatggatctcacccaggtattaaataattaaaaagtggagcagttcagtgacagagtc 743
Query: 545 atgctcagcacttgggagaaaaattctcttggagctttaccaacaatacaaggaatgttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgctcagcacttgggagaaaaattctcttggagctttaccaacaatacaaggaatgttg 803
Query: 605 aagctggcaacagagagcagtagacatgttttatcaactctgatgaagttaaaccttaag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagctggcaacagagagcagtagacatgttttatcaactctgatgaagttaaaccttaag 863
Query: 665 catt 668
||||
Sbjct: 864 catt 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_a17.g1 MSMg01no386_a17.g1 CHROMAT_FILE:
MSMg01no386_a17.g1 PHD_FILE: MSMg01no386_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:46 2005
(637 letters)
>mm_chrX_55316796_55317832
Length = 1037
Score = 942 bits (487), Expect = 0.0
Identities = 514/523 (98%)
Strand = Plus / Minus
Query: 115 tctcctctccccacttcttacacacactgatgatatttaattattttttaatttattttg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 tctcctctccccacttcttacacacactgatgatatttaattattttttaatttattttg 978
Query: 175 tttgagacagagcctcactatgtagctctgactgtcttagaacttgatttgtagagcaag 234
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 977 tttgagacagagactcactatgtagctctgactgtcttagaatttgatatgtagagcaag 918
Query: 235 ttagtcttaaattcacagagatccaaccacctctgcttccctagttttggcattaaaagt 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ctagtcttaaattcacagagatccaaccacctctgcttccctagttttggcattaaaagt 858
Query: 295 gtgcactatcataccaggtttgatgattttcaattctacccatgtcctttgagcagctgc 354
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 857 gtgcactatcataccgggtttgatggttttcaattctacccatgtcctttgagcagctgc 798
Query: 355 tgagtgcaacaccatgcctgacttttcagggcatttttcttaaagaagatgacattgtta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgagtgcaacaccatgcctgacttttcagggcatttttcttaaagaagatgacattgtta 738
Query: 415 aactgtgacaagagattagaactgaagtaatggggctgaaatcacactttctatattcac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aactgtgacaagagattagaactgaagtaatggggctgaaatcacactttctatattcac 678
Query: 475 atagaggtaaccaaaggaatatttttagatacatgagtgtttcctttttcttcagcatag 534
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 677 atagaggtaaccaagggaatatttttagatacaagagtgtttcctttttcttcagcatag 618
Query: 535 acttttagacagaatgacatttcaatagcaatagatatacctagactctgtattttgtcc 594
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 617 acttttagacagaatgacatttcaatagccatagatatacctagactctgtattttgtcc 558
Query: 595 tcaaatgacatcctcccaaacaaaacaatgaagatttctgaag 637
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcaaatgacatcctcccaaacaaaacaatgaagatttctgaag 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
