TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATCCCATTCCAGCACTAGAATAAGTGTTTAATATTTGTTTGTT
CTTTGAGGCCATACTAAAGCTTTAGCTTTGAGCATTATTTATCATAAAAT
ATTAAAGATTAGATTTTTGTCTTTTAAAAATTTATATTGTAAAATCTTTG
TCTTCCAAATCATTTGGAAATAAGCACATTACAAATGTACTTCAATGAGA
TAATACTGTCCTAAAATCATGTGCTATATTAAATCAATAGAATAAGGGAT
TATTATAGTTTCATTTCTGTTGCTCTGAAAAAATAATCTAAGAAAAGAAA
AACTTAGGAAATACAGTATATTTTTTATCAACTCATAATTCCTGGATACA
GTTCATCATTGTAGAAAAGGGAAAGCATAGAATTAAACAGGCACCAATAT
CACATGCACAGTCAAGAATATAAAGAAAGGGATAAATACATGCCCAGTTA
CTTACTGGCTTATCCTCAGCTTGATTTCTCCATTACTATTACAGTTTGGG
ACCAACTGCCTTTTAAAAAGGTTCCACACCTACTGGGTATGGGTCTTCCT
ACATGAATTACCTTTACAATAGGCTCTAATTACTTGGGTTACGAACTCCT
CCCACGGGAAAACTCCCTTTTTTGAGAGTTTCCTATCAAACTTCTCAACG
TCTCCCTATAAAACCCTTGCTTCCCCCAAATCCCTTTTTTCCTTACCCAC
ATTTTCCTTCCCTCTACCCCC

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAATGGAGAAATAGTCCTG
GTTGCAGTTAAAGAAAGGGATGTGAAAACAGATCAGAGCCAGAAGAGCTT
TGAAAATAGGAGTAGGGTGTTGAGTTATTTAATGAGAATATCCTTGAAGG
ACTGAAGAGAAGATGGGGATCAATTTTTCCACTGGAGTCCACAAGGACCT
GAGACCTGCTAACACTTTTAATTTCATCTACTGGAACCAGTATTAGTCTT
CTGACCTCTAAAAGTAGAAATTAATATATTTGGATTGTTTTAAGCCACCA
ACCCTATAATAATTGTTATATAATTAATAAAAAGCTTTAATAGAAAATTG
ATGAAAGCAGTATAAAGATTGCCTTCACTTTTCTGCCAATTCATCAAACT
TCAATTCACTCTGGGGTGTTACAGGGAATGATTTATGATTTTCTGACACT
TCCGCTGCATCTTTTCCCTCTTTTGCCTCCCAGTATCCTCTCTATCTTTT
TTGTCCCTCTCCCCCCTCTTTTCCCTTCTTCCCCCTCTCTCCTTTACGCC
TTTTCCCTTCCCCTTCGTTCTCCCTACTCTTTTCCCTTCATCCTCCCTTT
TTCCTTCCTCCCCCCCCCCCTTTTCCCCCGTTCTTTTCTTTTCTCTCCTG
TCTTCTCTTCTCCCTTCCATCAACTATTTCTCCTTTCCTTCCTTTTCCCT
CCCTCTCTTCTTCTTCTGTCACTTCCTATCCAACATCCTTCTTTCTATTT
TTCCCTTCTTCTTCCCCTCTCTCCTCGCGCN

Query= MSMg01no387_f16.b1 MSMg01no387_f16.b1 CHROMAT_FILE:
MSMg01no387_f16.b1 PHD_FILE: MSMg01no387_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:23 2005
         (465 letters)



>mm_chrX_85647207_85648071
          Length = 865

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%), Gaps = 2/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatcccattcc-agcactagaataagtgtttaatatttgtttgttctttgagg 63
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatccca-tccaagcactagaataagtgtttaatatttgtttgttctttgagg 263

                                                                       
Query: 64  ccatactaaagctttagctttgagcattatttatcataaaatattaaagattagattttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccatactaaagctttagctttgagcattatttatcataaaatattaaagattagattttt 323

                                                                       
Query: 124 gtcttttaaaaatttatattgtaaaatctttgtcttccaaatcatttggaaataagcaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcttttaaaaatttatattgtaaaatctttgtcttccaaatcatttggaaataagcaca 383

                                                                       
Query: 184 ttacaaatgtacttcaatgagataatactgtcctaaaatcatgtgctatattaaatcaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacaaatgtacttcaatgagataatactgtcctaaaatcatgtgctatattaaatcaat 443

                                                                       
Query: 244 agaataagggattattatagtttcatttctgttgctctgaaaaaataatctaagaaaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaataagggattattatagtttcatttctgttgctctgaaaaaataatctaagaaaaga 503

                                                                       
Query: 304 aaaacttaggaaatacagtatattttttatcaactcataattcctggatacagttcatca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaacttaggaaatacagtatattttttatcaactcataattcctggatacagttcatca 563

                                                                       
Query: 364 ttgtagaaaagggaaagcatagaattaaacaggcaccaatatcacatgcacagtcaagaa 423
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 ttgtagaaaagggaaagcatagaattaaacaggtaccaatatcacatgcacagtcaagaa 623

                                                     
Query: 424 tataaagaaagggataaatacatgcccagttacttactggct 465
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tataaagaaagggataaatacatgcccagttacttactggct 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)