BAC Information

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BAC

Clone NameMSMg01-388A02
ChromosomeX (Build37)
Map Location 84,371,948 - 84,372,275
singlet/doubletsinglet
Overlap geneIl1rapl1
Upstream geneNr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneLOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388A02.T7 (MSMg01no388_a02.b1)MSMg01-388A02.TJ (MSMg01no388_a02.g1)
ACCAG490605AG490606
length1,304755
length of high quality
(start - end)
---496 (81 - 576)
definitionCHROMAT_FILE: MSMg01no388_a02.b1 PHD_FILE: MSMg01no388_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:14 2005CHROMAT_FILE: MSMg01no388_a02.g1 PHD_FILE: MSMg01no388_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCTCTAACAACTTCATATTTTTCATTTTTAATACTCACAAAACACTTA
TATAACTAAANGGCGGCGCATCATCAAACACTCTCAAACTACAACCGCTC
CTTTCNNNNNNAACAAACGATAAATTCATAAACGTAAACTTTTTTTTTCC
NCCACTCCTTTATATCCTCTCTCATTTCTCTCTTACTCCCTCTCGTACCA
TCCCANTAAACACAAACATAAAGGGCAACAATCCATACCAGACCCACACG
CCTATCTTTCTCTCAGACATACTCTATAACTCTAAATATACTTTCCTCAT
TTAACCCTCCCTCCCAGCTCCCACATTCCNCTTCATCTCTCTCTCTTNAA
TACTCTGACTACTCTAATAATAATAATATTAATTACTACCGCCATACCTC
CCCCCTACTCTTCCTACACCTCCCCCACTCCCTCTCTTCTCAACCAAACC
ACATATACAATGAAATACCTACCCAAATCACAAAAATCCACCCACCANCC
TCCCCACCGCTATAACCTACCCTCATCCCGTCATCCTCTCCTCCTCCAAT
TCTCTTTCCTCCCCCACTCCCCTAAAGCACATTAAACACCACCCACAATT
TCTTTCTTTTTCCTCTCCGTCTCTACCCCACCGCCGCCATACACGATATT
CTCATTTCTACTCATATTATAGGCAATTATTTTCTTCCGCCTCAATACTC
ACATCCTAACTTCCTCTGTTGTACTGCGTTACTGTCTCATCCGCGGACCC
GATTTCTGCAGTTTCTCTACGGATCACCACATTCTCTATCACCTCCGATA
ACTCACGCATATAATATAATTGTATAACATTCNTTATTATTAGTCATACA
AACTCAATTCCCATTAGACGACTCATCACTCTCACATATGTACAAAATAA
CACTCATAACTATCACCTCTATACTAGCTCATATCACACTTACCAAGCTC
GCTCAACCCCGATCAATCATCTATATGTCTCTCCCTCTTTTGCTCGGTCC
TAAACTTCAGTATAGTATAGACTTCACGTCTGTCTTATTTCACATCACGC
CAATCATGTCCTATCACACCATAACCGTAGTCAATATTCCATATTGTTAT
ATTGATAAACAACAAGTACTATACACTAACATCTCATAGACTATTATTAT
ATTAGATACGACAACGCATATAATACAATAATATGGTAGCTACTCTTACA
CTCATACAGCAGTATACGATACTCCATCTTCCACATCTGCCTATAATCTA
CCCTACATGTCAACACACACGACTATACACACCTCTTATCACGCTCCTCT
TATN
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTACCCC
ATTTTTTAAATGGGGTTATTTGAATTTCTGGAATTCTAGCTTCTTGAGCT
CTTTGTATATATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAA
AATTTTTCCCAATCTGTTGGTGGCCTTATTGTCTTATTTACAGTTTCTTT
TGCCTTACAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTTGATTATTG
ATCTTGCAGCACAGGCCAATTCCTATATAAAACAGCTATTCTGTTTAGGA
ATTTTTCCCCTGTGCCCATATCCTTGAGGCTTTTTCCCACTTTCTCCTCT
ATAAATTTCAGTGTCTCTGGTTTTATATGGAGGTCTTTGATCCACTTATA
ATTCTAAGAAATTGAACAAATTATTTTGCTTCATACCCCTACAAAACTTC
AGTCTAGCTGTGACTGGTAGACATGTACCCCCAAGGAATACTTACTTCAT
GCGACTGAATAATGTGTCTTTTTAGCTTCACATTCGAGACATACTTCTTT
TTAACCATTTATTTTACTTTTTTCCCCTGTGAGAGTTACTTCCGAGTCTT
TGCCAATTTTGTACCACCTCTGACAATTCCGCGTATTTCCATCCCTACCC
CTTTTATCTTCCTCCACCCATCCTTGATTCCTCCGCAAGTTTTAAGGGAC
TTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_a02.g1 MSMg01no388_a02.g1 CHROMAT_FILE:
MSMg01no388_a02.g1 PHD_FILE: MSMg01no388_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:14 2005
         (496 letters)



>mm_chrX_84371380_84372275
          Length = 896

 Score =  559 bits (289), Expect = e-163
 Identities = 319/329 (96%), Gaps = 2/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 169 tttgccttacagaagctttgaaattttatgaggtcccatttgttgattattgatcttgca 228
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tttgccttatagaagctttgaaattttatgaggtcccatttgttgattattgatcttgca 837

                                                                       
Query: 229 gcacaggccaattcctatataaaacagctattctgtttaggaatttttcccctgtgccca 288
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 836 gcacaggccaattcctaaataaaaccgctattctgtttaggaatttttcccctgtgccca 777

                                                                       
Query: 289 tatccttgaggctttttcccactttctcctctataaatttcagtgtctctggttttatat 348
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tatccttgaagctttttcccattttctcctctataaatttcagtgtctctggttttatat 717

                                                                       
Query: 349 ggaggtctttgatccacttataattctaagaaattgaacaa-attattttgcttcatacc 407
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 716 ggaggtctttgatccacttataattctaagaaattgaa-aacattattttgcttcatacc 658

                                                                       
Query: 408 cctacaaaacttcagtctagctgtgactggtagacatgtacccccaaggaatacttactt 467
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 657 cctacaaaacttcagtctagctctgactggtagacatgtacccccaaggaatacttactt 598

                                        
Query: 468 catgcgactgaataatgtgtctttttagc 496
           |||  ||||||||||||||||||||||||
Sbjct: 597 catatgactgaataatgtgtctttttagc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)