BAC Information

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BAC

Clone NameMSMg01-388K15
ChromosomeX (Build37)
Map Location 114,627,231 - 114,627,528
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624153, LOC100039300, EG665045, LOC100039319
Downstream geneLOC624284, LOC665066, EG624388, ENSMUSG00000072994, LOC100039551, Tgifx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388K15.T7 (MSMg01no388_k15.b1)MSMg01-388K15.TJ (MSMg01no388_k15.g1)
ACCAG491105AG491106
length767764
length of high quality
(start - end)
445 (57 - 501)514 (78 - 591)
definitionCHROMAT_FILE: MSMg01no388_k15.b1 PHD_FILE: MSMg01no388_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:02 2005CHROMAT_FILE: MSMg01no388_k15.g1 PHD_FILE: MSMg01no388_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
CAGATGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAACGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
ATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGA
CATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CAGCTATTANNAAGAATGAATTTATGAAATTCCTAGCCCAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCAAAGAAACTCCCA
CATATGTATTCCCTGATAAGTGGATATTACCCCCCAACTAGGAATACCCC
GAAATAAGATATATTTTGGTAACACCTGAAATCCCCAAAAAAGAAGACCG
ACGTGGGACCCCATGCCCCCCCCAAATTTTGGAACAAACCCCCCGGCAGG
GGTTCTCAAACCCAGTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAGGCTGCTAGCAGAATACTG
GCCTCCAGGAAGGTAGGTTGAAAGTATTTAAGCCCATCCCACAGTGACAC
ACCTACTCCAAAATACCAAACCTATTAATAAAGCCACACTTTCTAATAGT
GCCACTTGCTTGGACAAGCATATTCAAACCATCATACATGGTTAATTCCT
GTTAACTATGAATAAACATATTGGTCATTATTTCTATATACTTGGTACTA
ATCACACTGTGACTAATGTATTTTGGTTTATTTCTTTCCAAAAGTTTTGC
CAATATATTTTTTAAAAAATATTGAAAGTGTTATTTTCAGATTATGAGAC
TGACGCGCTGCCTACTGCGCTAAGGAGGCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCTTGAGTGAGGTAACACATTCACAA
AGAAACTCACACAATATGTATTCACTGATATTTGGATATTAGCCCCAAAC
CCTAGATACCCAAGATATAAGAAAAAATTTGCTAAACCCATGAAACTCTA
GAAAAAGAAGACCTGAGTGGGGACACTAATGCCCCCCCTATAATTGGGAA
AAAAACCCCCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_k15.g1 MSMg01no388_k15.g1 CHROMAT_FILE:
MSMg01no388_k15.g1 PHD_FILE: MSMg01no388_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:02 2005
         (514 letters)



>mm_chrX_114627017_114627930
          Length = 914

 Score =  456 bits (236), Expect = e-132
 Identities = 287/312 (91%), Gaps = 15/312 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaggctgctagcagaatactggcctccaggaaggtaggttgaaagtatttaagcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgaaggctgctagcagaatactggcctccaggaaggtaggttgaaagtatttaagcccat 274

                                                                       
Query: 61  cccacagtgacacacctactccaaaataccaaacctattaataaagccacactttctaat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctcacagtgacacacctactccaaaataccaaacctattaataaagccacactttctaat 334

                                                                       
Query: 121 agtgccacttgcttggacaagcatattcaaaccatcatacatggttaattcctgttaact 180
           |||||||||| ||||||||||  |||            ||||||||||||| |||||| |
Sbjct: 335 agtgccacttccttggacaag--tat------------acatggttaattcttgttaagt 380

                                                                       
Query: 181 atgaataaacatattggtcattatttctatatacttggtactaatcacactgtgactaat 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 atgaataaacatattggtcattatttctatgtacttggtactaatcacactgtgactaat 440

                                                                       
Query: 241 gtattttggtttatttctttccaaaagttttgccaatatattttttaaaaaa-tattgaa 299
           | | || ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 441 ggaattcggtttatttctttccaaaagttttgccaatatattttttaaaaaaatgttgaa 500

                       
Query: 300 agtgttattttc 311
           | ||||||||||
Sbjct: 501 aatgttattttc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)