Query= MSMg01no388_m04.b1 MSMg01no388_m04.b1 CHROMAT_FILE:
MSMg01no388_m04.b1 PHD_FILE: MSMg01no388_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:09 2005
(498 letters)
>mm_chrX_40519094_40519990
Length = 897
Score = 909 bits (470), Expect = 0.0
Identities = 491/498 (98%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 1 ggaaatttccaaattacattttaattcagctttaacctcactcataaattacagttttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggaaatttccaaattacattttaattcagctttaacctcactcataaattacagttttaa 638
Query: 61 acattcaattatctgatggacatttccaaattgatactatatcagttactctaaattctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acattcaattatctgatggacatttccaaattgatactatatcagttactctaaattctg 578
Query: 121 tataactaaaaggaagggaatcattctaacaccctcaattataagcctgtttacattgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tataactaaaaggaagggaatcattctaacaccctcaattataagcctgtttacattgtt 518
Query: 181 agacactggctccttcatgcttgccctctttcagtgagccaccagaatttctctgtgcaa 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 517 aggcactggctccttcatgcttgccctctttcagtgagccaccagaatttctctgtgtaa 458
Query: 241 cacattgcttcatccagcaaagttgatctctacatctgaaatgtactcttagcatatctc 300
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 cacattgtttcatccagcaaagttgatctctacatctgaaatgtactattagcatatctc 398
Query: 301 actgagatttttaaaaaaggaaatctaactaatctgcttgcatttcctttcattcccctt 360
||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 397 actgagattttaaaaaaag-aaatctaactaatctgcttgtatttcctttcattcccctt 339
Query: 361 tacccttttactgtgctgttgcctacttcctgacagcaaaaagaaaaatatcggagggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tacccttttactgtgctgttgcctacttcctgacagcaaaaagaaaaatatcggagggag 279
Query: 421 gtagaaaagatgcaaaagatagagctgggtgtcttatgtatatggaataaacactctacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtagaaaagatgcaaaagatagagctgggtgtcttatgtatatggaataaacactctacc 219
Query: 481 acccagctatatctccag 498
||||||||||||||||||
Sbjct: 218 acccagctatatctccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 897
Length adjustment: 10
Effective length of query: 488
Effective length of database: 887
Effective search space: 432856
Effective search space used: 432856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_m04.g1 MSMg01no388_m04.g1 CHROMAT_FILE:
MSMg01no388_m04.g1 PHD_FILE: MSMg01no388_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:09 2005
(512 letters)
>mm_chrX_40427733_40428644
Length = 912
Score = 803 bits (415), Expect = 0.0
Identities = 436/443 (98%)
Strand = Plus / Plus
Query: 69 atatatatatatatataagtatatccaaaaaacccattaactttcacttttctatcctca 128
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 atatatatatatatataagtatattcaaaaaacccattaactttcacttttctatcctca 328
Query: 129 tgtttccccttccccattgctagtaattatgagtttttgcaaagttaaaattctggcctt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtttccccttccccattgctagtaattatgagtttttgcaaagttaaaattctggcctt 388
Query: 189 ttatttatcgtagttaggagtctgtgcttattttacactcctgatacttaaaattatgct 248
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 ttatttatcgtagttaggagtctgtgcttattttgcactcctgatacttaaaattatgct 448
Query: 249 tctgttgatccttacaaggttctaggggaaaaatgcattctcaaaatagcttatagctac 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctgttgatccttacaaggttctaggggaaaaatgcattctcaaaatagcttatagctac 508
Query: 309 aatttttggttgcacaaaatataatgaaataaccgaatacaataagtataaagtgtagag 368
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 509 aatttttggttgcacaaaatataatgaaataagcgaatacaataagtataaagtgtagag 568
Query: 369 agatgtcctctaaagcaatttcttttctagaacaaatatgtgatctacacagcacaccta 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agatgtcctctaaagcaatttcttttctagaacaaatatgtgatctacacagcacaccta 628
Query: 429 tgcttacaataacaaaatgatttgtttttctgagtatgtcctatatattatatgcaatct 488
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 629 tgcttaaaataacaaaatgatttgtttttctgagtatgtcatatatattatatgtaatct 688
Query: 489 aataagtaatataaaactgagaa 511
|||||||||||||||||||||||
Sbjct: 689 aataagtaatataaaactgagaa 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
