Query= MSMg01no389_h02.b1 MSMg01no389_h02.b1 CHROMAT_FILE:
MSMg01no389_h02.b1 PHD_FILE: MSMg01no389_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
(430 letters)
>mm_chrX_162914964_162915794
Length = 831
Score = 804 bits (416), Expect = 0.0
Identities = 428/432 (99%), Gaps = 3/432 (0%)
Strand = Plus / Plus
Query: 1 ttttcatagcagcaatgctgaggcaagctttaaaaaaaaaaaa-agattctgttaccagg 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttttcatagcagcaatgctgaggcaagctttaaaaaaaaaaaatagattctgttaccagg 260
Query: 60 tagtcataaaccttagagaattttcccccagcaagcttttaaaataataaaaatgctgtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtcataaaccttagagaattttcccccagcaagcttttaaaataataaaaatgctgtc 320
Query: 120 ttaaacagtaaaatgacattgtacttaaagaactacagaagcccagtgggacctggaata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaacagtaaaatgacattgtacttaaagaactacagaagcccagtgggacctggaata 380
Query: 180 tgaaccaaaaatgctttttctccaaattttttcaaatatcccctgagaggataaaattgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaccaaaaatgctttttctccaaattttttcaaatatcccctgagaggataaaattgc 440
Query: 240 ctcccagtgcaaaactactactccaaaaagcccacaaacatgtttgaatttcaacactgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcccagtgcaaaactactactccaaaaagcccacaaacatgtttgaatttcaacactgc 500
Query: 300 tccctcactccctaggtgaccttggaaacgaaatctaaccctcccgggtaccagcaaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccctcactccctaggtgaccttggaaacgaaatctaaccctcccgggtaccagcaaatt 560
Query: 360 tctcatctgtaacagaaccactg-tattggaaacaccatgaaaaacgaaagggtgcacag 418
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 561 tctcatctgtaacagaaccactgct-ttggaaacaccaggaaaaacgaaagggtgcacag 619
Query: 419 agtactgactca 430
||||||||||||
Sbjct: 620 agtactgactca 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space: 346062
Effective search space used: 346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_h02.g1 MSMg01no389_h02.g1 CHROMAT_FILE:
MSMg01no389_h02.g1 PHD_FILE: MSMg01no389_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
(472 letters)
>mm_chrX_163092742_163093613
Length = 872
Score = 882 bits (456), Expect = 0.0
Identities = 468/472 (99%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgactcccgagtgc 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 552 actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccaagtgc 493
Query: 61 tgggattaaaggcgtgcgccaccacgcccagctaggaaaggaattgaatgactacaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgggattaaaggcgtgcgccaccacgcccagctaggaaaggaattgaatgactacaacca 433
Query: 121 ggttggaaagacaaagcagataaagcatttcagatgcctttggtaatactgacaggaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggttggaaagacaaagcagataaagcatttcagatgcctttggtaatactgacaggaact 373
Query: 181 ccatgtccttggagaagggaggcaagagataatgcccagtcagatagagtcttggtcaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccatgtccttggagaagggaggcaagagataatgcccagtcagatagagtcttggtcaaa 313
Query: 241 ctgtagtctggttgattattgttatggtttagatacaaaatgtccctcccataagatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctgtagtctggttgattattgttatggtttagatacaaaatgtccctcccataagatcat 253
Query: 301 gtgcttaaatgtttggtccctagttaatggtactgtttgagcgaggagagggggtgagga 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtgtttaaatgtttggtccctagttaatggtactgtttgagcgaggagagggggtgagga 193
Query: 361 acctttgggaggtagagcctacctgaaggaagtgggtctttggactgcaggccttgagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 acctttgggaggtagagcctacctgaaggaagtgggtctttggactgcaggccttgagat 133
Query: 421 gtatcatctgatcctatctgctatcctttccctgcttcctgatctatctagg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtatcatctgatcctatctgctatcctttccctgcttcctgatctatctagg 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
