BAC Information

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BAC

Clone NameMSMg01-389O03
ChromosomeX (Build37)
Map Location 66,652,424 - 66,797,832
singlet/doubletdoublet
Overlap geneAff2
Upstream geneLOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneEG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389O03.T7 (MSMg01no389_o03.b1)MSMg01-389O03.TJ (MSMg01no389_o03.g1)
ACCAG492031AG492032
length746760
length of high quality
(start - end)
373 (79 - 451)243 (82 - 324)
definitionCHROMAT_FILE: MSMg01no389_o03.b1 PHD_FILE: MSMg01no389_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:37 2005CHROMAT_FILE: MSMg01no389_o03.g1 PHD_FILE: MSMg01no389_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,652,424 - 66,652,796)(66,797,590 - 66,797,832)
sequence
NAAATCTAAAATTGCGGGCGCTAAANGAATCACTATTTCGAGAGGATCCG
CGGAATTCTGTCCTTTCCCTGACTTTCCCACTCTCTCTTTTTCCCACTCA
AACTTCTCTAAAATTGAAGTAGACTCTACCTCCATAGGCCACATTTTGGA
CACAGGCACTTTCAGGTTATTTCCTTTCTCCCTTGCTCCCTCCTCCCCCA
TAGTTTCAAAGATTGCTTTTCACTTTGCATTAATTAAGAGCGAATATGAT
AATGTAACTTTGAAAGTTATACTATTGTAGTATTTCTATGTCCCTTGTTT
AAAAAGACATGATCTAATTTGTTTGGTATAAGGCATCATTTTTTTTCTAT
TTTGCTAGCCTTAAATACCAACTTGTTTTAATTAGAAATAACTGTAAGGC
ATCTGCAGAAAATACATGTTCTTTCCTTAATCTGGGGTCACTCAAGAGAA
TTGCAAAGGGTTTTCTATACTACATTTGTTAATAAAGAGAAACGCTAAAT
ATAAACAATATTTCAAGATGAGAGCGAACAATGAAATACCTAAACCCTCT
CCAGGTCCAGCTGCTTTATATCCACATTGCCAGAGGGGGGGACAAGAGAG
GCACGACCAGCACACACCACCTTCTGCAGCCTTAAAACTACAGGGACCCA
TCGTCATCCGCCAATGACCTGTCCGCCCGGCCAGTACAGACAACATGCAC
CCGAAGGCCCTATACCCCCGTTAAACATTGACTCTTCCCTCGTCTT
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACTATTGGAG
GTGAACTATAGAAGGTTACGAGAAACATCGGTATCACGACTGAAGGTGGA
GGCATCGGTGTTGAGGAGTGGGTAGTCTCCTGGTGAGATGGGATCATTCG
ATTTTTTTGTTCTGGATAAAAGCTTGCTTCACTTTTGCTGATGGGAGTTT
GGGGTGCAGAATTCTTTGGAATGCCCACCAGATGATTCTGACTGGAATGG
TTAGATAGTAGATCCTTCATTTCATCATAACTTCCAAGAGTGTTCTGGAC
TCGGTTGGCAAGGGCGTCCCCTTTGTTTTTCTAAAGTAACAAAAAGATGG
GGGTGGGAGGAGAATTATTTAATAGACGTCTGCTTCCTGGCGTTAACACT
TCAAATAGATGCCTTAGATAGACCAATAAAGAAAGCTTTTTAAAATTACC
ATACTGTCATGTAATTTCATACCTTTGTGTGCTACATGAGGAAAACCTAA
CTCTTACATTGCATAGAAATTTGCAACCCCATAGAATTCTTCCCAGATCC
TCCTTCCTGAACAGCTTTTCCTCTTCTATGGAGAAACCTACCTACCCCAC
CCCTCCCCCCCCCTTTTCCCCCTCTTCTTCACCCCCTTCGCCCCCTTTCC
TCCCCCCCCGCAAACCTTATTCCCTCTTTACAATCCCCCCTCTCCCCCCC
TCTCCTCCCCGTCCCCCCCCCCCGCTCCCTCCTTCCTCCTCCATCCCCCT
TCCCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_o03.b1 MSMg01no389_o03.b1 CHROMAT_FILE:
MSMg01no389_o03.b1 PHD_FILE: MSMg01no389_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:37 2005
         (373 letters)



>mm_chrX_66652224_66652996
          Length = 773

 Score =  714 bits (369), Expect = 0.0
 Identities = 372/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctctctttttcccactcaaacttctctaaaattgaagtagactctacctccatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctctctttttcccactcaaacttctctaaaattgaagtagactctacctccatagg 260

                                                                       
Query: 61  ccacattttggacacaggcactttcaggttatttcctttctcccttgctccctcctcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacattttggacacaggcactttcaggttatttcctttctcccttgctccctcctcccc 320

                                                                       
Query: 121 catagtttcaaagattgcttttcactttgcattaattaagagcgaatatgataatgtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagtttcaaagattgcttttcactttgcattaattaagagcgaatatgataatgtaac 380

                                                                       
Query: 181 tttgaaagttatactattgtagtatttctatgtcccttgtttaaaaagacatgatctaat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaaagttacactattgtagtatttctatgtcccttgtttaaaaagacatgatctaat 440

                                                                       
Query: 241 ttgtttggtataaggcatcattttttttctattttgctagccttaaataccaacttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtttggtataaggcatcattttttttctattttgctagccttaaataccaacttgttt 500

                                                                       
Query: 301 taattagaaataactgtaaggcatctgcagaaaatacatgttctttccttaatctggggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taattagaaataactgtaaggcatctgcagaaaatacatgttctttccttaatctggggt 560

                        
Query: 361 cactcaagagaat 373
           |||||||||||||
Sbjct: 561 cactcaagagaat 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no389_o03.g1 MSMg01no389_o03.g1 CHROMAT_FILE:
MSMg01no389_o03.g1 PHD_FILE: MSMg01no389_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:37 2005
         (243 letters)



>mm_chrX_66797390_66798032
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcacgactgaaggtggaggcatcggtgttgaggagtgggtagtctcctggtgagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatcacgactgaaggtggaggcatcggtgttgaggagtgggtagtctcctggtgagatgg 384

                                                                       
Query: 61  gatcattcgatttttttgttctggataaaagcttgcttcacttttgctgatgggagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatcattcgatttttttgttctggataaaagcttgcttcacttttgctgatgggagtttg 324

                                                                       
Query: 121 gggtgcagaattctttggaatgcccaccagatgattctgactggaatggttagatagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 gggtgcagaattctttggaatgcccaccagatgattctgactggaatggttagatagcag 264

                                                                       
Query: 181 atccttcatttcatcataacttccaagagtgttctggactcggttggcaagggcgtcccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 atccttcatttcatcataacttccaagagtgttctggactcggttggcaagggcatcccc 204

              
Query: 241 ttt 243
           |||
Sbjct: 203 ttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)