BAC Information

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BAC

Clone NameMSMg01-390E01
ChromosomeX (Build37)
Map Location 119,967,371 - 119,967,759
singlet/doubletsinglet
Overlap genenone
Upstream geneEG245575, LOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390E01.T7 (MSMg01no390_e01.b1)MSMg01-390E01.TJ (MSMg01no390_e01.g1)
ACCAG492312AG492313
length746739
length of high quality
(start - end)
389 (77 - 465)527 (84 - 610)
definitionCHROMAT_FILE: MSMg01no390_e01.b1 PHD_FILE: MSMg01no390_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:06 2005CHROMAT_FILE: MSMg01no390_e01.g1 PHD_FILE: MSMg01no390_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGCAGGAC
CGCGGAATTCTCTATCTTACCCCTCAATTGAGCCTAACCTGGGTAAAATG
GTGTTACAAATGTAGGATTTTCCCCAGTCCAGATATGTAATAAAGATTAC
ACATGAGATATCTTTCAGCAAGTGCCAGGATAAGTCACAAGCCACACTCA
ATCTTTTAATACTACAATGAAAGTGGAAATATTCTAGCTAAATATTGCCT
GAGTTTGGACTGTATTTGGAGCATAATTATATATGAAGAAGGGTTGTGCA
TTCAGATGGTGACAAAGTTCCTATTTGCCACCATATAACAGGTGAAGTAT
GTTCTTTTGGGAAGAGGAGAGGGGCTGTCTTTATTGTCTCACTTTACCAT
GCAGGCCAGACCAGTGTCCCAATACCCACCCAACTGCTACAACATATGAG
CATCCCAGGAGTTCCACAGTAACCAAGAAGACAGGCAGTCTGCAGTAACC
CGAGATACCAGAGCCTGCTCTAATCAGAGACACAAAAGACCCCCACTAAC
AAGAGCCAACACTCTATGCCTCCAATGAGACTACCTCTAACTCACGTCAC
AGAGCTCTACCTGTCCCCAAGGCTGCCAGTTCCAGTCCCAGACCCCCACG
CCAGTTAATACCAAATGCCCACCCGACACCGTACACAACCCCCAAGGCGG
CAGACACCCCTGCCCCTCTGCAATCATCCCAACCCCACCACCCCCA
NNNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACTTGAGGAAGGAG
ATGCCTAAAAAGATGCAAGAAGCTTAAATAATACTAAAAATACTGGACCA
GAAAAGAGAGACTGATTATCACATAGTAATCAAAATAAAAATTAAAAATA
AAAAACAGTACAAAGAAAGAATATTAACAGCTAAAAGAGAAAAGCCAAGT
AACATATAAAGGAAAACCTCTTAGAATCACACCCAACATCAAATAAAAAG
CAGTAGGACCTACACAGATGTCCTATATACTCAAAAAAAAATCCCCACAA
AACCCAAAATACATAACAACAGCAACCACAACCCACAGAGGCCAGCCCAG
ACCACTATACCAAGCATTTTTTTAAATAATCATAGACCAAGAACATAAGA
TATTTCATAGTAAAATCAAATTTAAAATATATATACACACACACACACAC
ACACACACACACACACACATTTATCCCTACTGATACTGAAAAGAAAATGC
CAACCCAAGAAATTAAGTAAAACAAGTAGCAATCATTTCTTACTAATATT
TCTCAATATCAATGTACTCAATGTCCCTATAAAAAGTCACAGACTAACAT
AATGAANACAAAAACAGTATCCATCTTCTGCTGCATAGAAAAAACACCCC
TCCACCCCCACCGAAACACAGATATATCCTTAAGAGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_e01.b1 MSMg01no390_e01.b1 CHROMAT_FILE:
MSMg01no390_e01.b1 PHD_FILE: MSMg01no390_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:06 2005
         (389 letters)



>mm_chrX_119967171_119967959
          Length = 789

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagcctaacctgggtaaaatggtgttacaaatgtaggattttccccagtccagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 attgagcctaacctgggtaaaatggtgttacaaatgtaggattttccccagtccagatat 530

                                                                       
Query: 61  gtaataaagattacacatgagatatctttcagcaagtgccaggataagtcacaagccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtaataaagattacacatgagatatctttcagcaagtgccaggataagtcacaagccaca 470

                                                                       
Query: 121 ctcaatcttttaatactacaatgaaagtggaaatattctagctaaatattgcctgagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctcaatcttttaatactacaatgaaagtggaaatattctagctaaatattgcctgagttt 410

                                                                       
Query: 181 ggactgtatttggagcataattatatatgaagaagggttgtgcattcagatggtgacaaa 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 409 ggactgtatttggagcataattatacatgaagaagggttgtgcattcagatggtgacaaa 350

                                                                       
Query: 241 gttcctatttgccaccatataacaggtgaagtatgttcttttgggaagaggagaggggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttcctatttgccaccatataacaggtgaagtatgttcttttgggaagaggagaggggct 290

                                                                       
Query: 301 gtctttattgtctcactttaccatgcaggccagaccagtgtcccaatacccacccaactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtctttattgtctcactttaccatgcaggccagaccagtgtcccaatacccacccaactg 230

                                        
Query: 361 ctacaacatatgagcatcccaggagttcc 389
           |||||||||||||||||||||||||||||
Sbjct: 229 ctacaacatatgagcatcccaggagttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)