BAC Information

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BAC

Clone NameMSMg01-390I01
ChromosomeX (Build37)
Map Location 22,718,331 - 22,718,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
Downstream geneKlhl13, EG635719, Wdr44, EG236749, EG214450, EG245376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390I01.T7 (MSMg01no390_i01.b1)MSMg01-390I01.TJ (MSMg01no390_i01.g1)
ACCAG492498AG492499
length767744
length of high quality
(start - end)
286 (88 - 373)490 (85 - 574)
definitionCHROMAT_FILE: MSMg01no390_i01.b1 PHD_FILE: MSMg01no390_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:26 2005CHROMAT_FILE: MSMg01no390_i01.g1 PHD_FILE: MSMg01no390_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACATCATAATTCCGCGGCGCTAAANGAATCACTATAGTGCGNAACACC
CGCGGAATCTCAAATTGTTGCCCACACCACACCTCTACAGTCAACACATA
ATAGACACAGGCAAAATGTCGTGGGTCCAGTCACAATTTGAGAGAACATA
GTTGACTTTAACAAAATTATTACAGCAAAGGAAAAAAAAAAAAAGCCAGT
CATGAGACTGGAACTTCTGGCCTGTGGGGAAACCCAACATGGGTTGGGGT
CAATCACTTTAGCTAAGGGACCATACCTGTGAAGATGGACTTACCTTAAG
ACCGTCTAAAGAAATAGATGTAATTTTTGGTTCTGTAATGAGATTTTGTA
CTTTGGCTTTCCAGAATCCCCACCCCGAGCGGAAAAGCTTATGGACTGCA
TCCATGTGAGACATATAAGTCTGTCTGCTTTTCTAGCACATAATTTTACC
TTTTCCTCCTTTGATCTCTTTTCCAAGCATACTTTCATTAAAATTCTGGG
GCTTTAATCTACAGTTTTTCTTTCTCTAAGGCCCTGCTCCCTGCCACATG
GCTGCGCTTTACCCGACAGCCCCATTACGTGCTATGACTTCTTTTGATCC
CCCCGCCCCCCTTTTCTTGCCCCAGGCATCCAATGAACGTGTACCCGCTC
ACCCCCGCCTTACCCAATTCTCCTCCCACACCCCCAACTGCCCTCTAAGG
CTTCCCCCTAAAGAACCTTCCCTCACCTCCTCCCCTATTCATGGACCCAC
AAACACCCCCCCCCCAN
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGGGAGGACTCCAG
AAAATCAAAAAAAAAACCCTTAAAAGATGGGGCTCAGAGCTAAACAAAGA
ATTCTCACCAGAGGAATACCGAATGCCTGAGAAGCACCTGAAAAAATGCT
CAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTC
CATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCACTTTTGGAGGG
ATTATAAGCTTGTACAACCACTCTGGAAATCAGTCTGAGGGTTCCTCAGA
AAATTGGACATAGTACTACAGGAGGATTCCGCAATAACTCTCCTGGGCAT
ATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAGTGGA
GTACAATTCAGCTATTAAAAACAATGAATTTATGAAATTCCTACGCCAAT
GGGTGGATCTGGAGTATATCATTCATAGTGAGGTTAACCCCATTCCCAAA
CAACCACATGATATGCCCCCCCCTGATAACGGCTATTAACCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_i01.b1 MSMg01no390_i01.b1 CHROMAT_FILE:
MSMg01no390_i01.b1 PHD_FILE: MSMg01no390_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:26 2005
         (286 letters)



>mm_chrX_22718318_22719003
          Length = 686

 Score =  511 bits (264), Expect = e-149
 Identities = 283/296 (95%), Gaps = 12/296 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcaacacataatagacacaggcaaaatgtcgtgggtccagtcacaatttgagagaac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 307 cagtcaacacataatagacacaggcaaaatgtcgtgggtccagtcagaatttgagagaac 248

                                                                       
Query: 61  atagttgactttaacaaaattattacagc----------aaaggaaaaaaaaaaaaagcc 110
           |||||||||||||||||||||||||||||          |||  ||||||||||||||||
Sbjct: 247 atagttgactttaacaaaattattacagcaaaaaaaaaaaaa--aaaaaaaaaaaaagcc 190

                                                                       
Query: 111 agtcatgagactggaacttctggcctgtggggaaacccaacatgggttggggtcaatcac 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agtcatgagactggaacttctggcctgtggggaaacccaacatgggttggggtcaatcac 130

                                                                       
Query: 171 tttagctaagggaccatacctgtgaagatggacttaccttaagaccgtctaaagaaatag 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tttagctaagggaccatacctgtgaagatggacttaccttaagaccgtctaaagaaatag 70

                                                                   
Query: 231 atgtaatttttggttctgtaatgagattttgtactttggctttccagaatccccac 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  atgtaatttttggttctgtaatgagattttgtactttggctttccagaatccccac 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)