BAC Information

Click to search

BAC

Clone NameMSMg01-391L11
ChromosomeX (Build37)
Map Location 53,270,121 - 53,270,426
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391L11.T7 (MSMg01no391_l11.b1)MSMg01-391L11.TJ (MSMg01no391_l11.g1)
ACCAG493423AG493424
length784793
length of high quality
(start - end)
245 (67 - 311)361 (77 - 437)
definitionCHROMAT_FILE: MSMg01no391_l11.b1 PHD_FILE: MSMg01no391_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:01 2005CHROMAT_FILE: MSMg01no391_l11.g1 PHD_FILE: MSMg01no391_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTAAACGATNACTATAGTTCGACCATCCGCGGAATTCTATG
GATATTCCGATTTCAATAGTTTTCACTTCAAAAAATATAGTTAAAAAATT
CCAAATGTACATTTATTTTCGTATTTCTGGTCAACATTTTCCTACTGAAG
TGACAGAAATATTTACTATTTTTATATCTTTATACTAACATTATATTTCT
GTTTAATTTGTAGGGGACAGGTTTATTTGAGACAGTCCTACATTACTCAT
GCTGAACTCATACTCACTATGTAGCTATGGACAGTCAAAGGACTTGATCC
TCCTGCATTCTACTGTCTAGTGCTGGGATTACAGATTACAGGACCATAGC
TATTAAAAGATTTTCAATGACTGATAAAAGAGGTGAGGATTTGACTTTAG
GATTTCGCCATTTTTCTAATTGTAGTCATAGTTTATATTGAATAGTCATT
AGGTGAAAGGCAACAGAGATTCTGGCCTTTCAGATTTCTACTCATTAGCA
GGTTAGTTAATACATCTAAATATCCGCCCAAAATGTCATGGGCTACACGG
AGAATCGCAACTTTAAGATCTTGCCCACGGGGGGCTTTCTATGTTTAAAC
AATCCCCCACAAACCACCCAAACTTATGACTTTACCTTGGATCGACCCTC
CCCCCCCCTCTTTCCCCCTTGTGTTATCCACACCCCCCCTCCCATACTTG
TACCTCCTCAAAACTATCTCCCCCCCCCCCCCACTTATTTTTCTCCACCC
CGCCTTCCTCTCCCCCCCCTCACTTTTTAACTTC
NCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCCTCTGCAAGAGCAGCCAA
TGATTTTATATTCTGAGTCATGTAAAGATCTCCACATTTCTGGAGAGAGA
AGGAAGGTGTAGGAAGAGAACATTACTCAAAATGTCCAAATTCATCTAAG
AATAAATTAATGCTTGCAAGGGTCTGTCAAGATGCACAACAAAAACAAGA
ATAAATAGAAGGTGTGTAAAAATTGAAAAGAATGTTTGTTTCTGCTCTGT
GGTGTGTTCTGACCAGTTTTTTTTGAATACACTAAATGAAGCTGCACTGA
GAAGCATAAAGAAGGCAGGTACCACATTCTGACAAGTGCTAAGGTTGTTT
CAACTGTATTGGTGTAATCCTTCAGGGGCTTCTTGTCAGAAATAAACCCC
CTTTATCAATTCCCCAACAGTAAATTCCGTGTGTCTCATTTGGAGACTGG
GCAGAAGATATGCGATATGCTCCACGAATGATTAACCTTTACGCCCTCTA
ACTCAGAAACCATTTTCAGGGATCCTATGAACTCCCAAAGGCCAGCTCCT
ATACCGCCTCGCCTCCTTCTTTCTTCTTTGCCCATTCCACTACTTCAGCC
CCTTTCTCTTAACCGAAGACCTTATCCCGCCCCCCTCCACTTTCCTGTTC
CCCCTTTCTCCCTTCTTTCCTTTCCTTACTCCTACCTTTCTCCTCCTGTG
TGGACCTCCCTTCCCCTTCTCCCCTCCCCACTCCTTTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_l11.g1 MSMg01no391_l11.g1 CHROMAT_FILE:
MSMg01no391_l11.g1 PHD_FILE: MSMg01no391_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:01 2005
         (361 letters)



>mm_chrX_53269866_53270626
          Length = 761

 Score =  255 bits (132), Expect = 2e-72
 Identities = 257/318 (80%), Gaps = 38/318 (11%)
 Strand = Plus / Plus

                                                                       
Query: 70  agagaaggaaggtgtaggaagagaacattactcaaaatgtccaaattcatctaagaataa 129
           ||||||||||||||||| || | ||||||| |||||| || |||||| ||||||||||||
Sbjct: 256 agagaaggaaggtgtagtaacaaaacattattcaaaaggttcaaatttatctaagaataa 315

                                                                       
Query: 130 attaatgcttgcaagggtctgtcaa-------gatgc-------acaaca--aaaacaag 173
           |||||||||||||||||||||||||       ||  |       ||||||  ||||||||
Sbjct: 316 attaatgcttgcaagggtctgtcaaaaaacacga--caacaaaaacaacaacaaaacaag 373

                                                                       
Query: 174 aataaatag---aaggtgtgtaaaaattgaaaagaatgtttgtttctgctctgtggtgtg 230
           || ||||||   ||   | | ||||| |||| || ||||||||||||||||||||||| |
Sbjct: 374 aaaaaatagataaa---gagaaaaaactgaagaggatgtttgtttctgctctgtggtgag 430

                                                                       
Query: 231 ttctgaccag---tttttttt----gaatacactaaatgaagctgcactgagaagcataa 283
           ||||||||||          |    ||| |||| |||| |||||| ||||||||||||||
Sbjct: 431 ttctgaccaggac-------taaacgaacacacaaaataaagctgtactgagaagcataa 483

                                                                       
Query: 284 agaaggcaggtaccacattctgacaagtgctaaggttgtttcaactgtattggtgtaatc 343
           ||||||||||||||||| |||||| ||||||||||||||||||||||||| || || |||
Sbjct: 484 agaaggcaggtaccacactctgaccagtgctaaggttgtttcaactgtataggcgttatc 543

                             
Query: 344 cttcaggggcttcttgtc 361
           ||||||||||||||||||
Sbjct: 544 cttcaggggcttcttgtc 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)