NNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGTCTTATGATAGACTCCATTGATTAACTTCCCACAGAAC
CTTGCTGAAAATTAATATGTAGTCACCTACAGGCTTATCTATAAAGAATG
TTATGATCAATAGCCTGACATGGATTGACAAGTGGGTAGTATTGTACCCA
ATTATATACTTGTAGTATATAATTTATTCTCTTACAACATTGATGAATAC
AACATTGATGTCTGCAAAGTTCTCTTATTAAAAGAATTTTAAAACAAAAA
TATATTCTCAATATGTACATACAAAGTTATAAATGCATCTTCTTAAAATT
TTCCACCTGAAGAGATTTACCTTTCAGCTTCCATCTTTTAAAACTCATGT
CTGTGTGTGGTTATTGGTGACAGAGAACTTGATTATCATATGGGAGGAAT
ACGGTTCTAANATAAGCAGTGTCAAAATGCAACTAAAGTAAGATTTAAGA
AAAATAAAGCTACATTTTATTAGGAGGCTGAATTATTTTTTCCCTATTTT
TCCACCCTTTTTACAATGGTTCCTGATGATCATGGGATTAAAGCCCATGC
CCTCGGGCATTCAAACACCCATTCTGCTGCTGGACCCCATTCCCCGCCTT
ATGGGTACTTTACTTTTGAAAGGCCCCTTATTAAGCACCCCAGGCTGCCC
AGAAAAATTTTTAACCCCCCGTGAACCTGGATTCCCGGTTTCCCCCCTCC
CGCCCCAGGAATACCATATAAGCCGGACCTGGGGCTAATTAACCC

NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGGAAAAGAAATCAAGTAGAA
TGGTATATATAGTGGAAAATCATCAAAGGCTTAGACCCATCCATATACCC
TCCATTTGGGGGGNNNNNNNCNCCNCCCCCNNCCCCCCNNNCNNAAGTCT
ATATTTCAGCTTTTGGGGCCAAGGCNCAGAAATTTTTATTTGGGGAACGG
TGGCCTTTTTCCGAGCCTATTGGGCTGGGACCAAGCTGTTTCCCTTTTGG
CCAATGGAACCGAATTTAAGCCGGACNAGGGTTTCCCCCACCCCCCCCCC
CCTTTTCCCCACCCCTTGCTTCCCCAAAATCGGGGGATTTCCCCCCCCCC
CCAAGGGTGGGGCCCATTTGGGGGGTTTTTGGGGCCTAAAAAATTTTTGC
CCCCCCCCCATTGGGGGGTTTTTTTCTCCCCCCCAATTTCCCCGCGGCGG
CCCCCCCCATAACTTTCCCCCCCCCCCCTGGGCGCCCCCGCGCCCCCCTT
ACTCCCTCTCTTTTGTACTAAAAAAACCTTTCCCCGCCCTCTCCAACAAA
ACCCCCCCCGTGGCTCTCTTTTCATTGTGGTTTGCGCCTTCCCCCCCCCA
CAAACCACCTTTTCTCCCCCCCTTTCCCCCCTTTTCN

Query= MSMg01no392_g23.b1 MSMg01no392_g23.b1 CHROMAT_FILE:
MSMg01no392_g23.b1 PHD_FILE: MSMg01no392_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:57 2005
         (408 letters)



>mm_chrX_37949563_37950370
          Length = 808

 Score =  700 bits (362), Expect = 0.0
 Identities = 388/404 (96%), Gaps = 13/404 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgtcttatgatagactccattgattaacttcccacagaaccttgctgaaaat 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtcaaatgatagactccattgattaacttcccacagaaccttgctgaaaat 264

                                                                       
Query: 65  taatatgtagtcacctacaggcttatctataaagaatgttatgatcaatagcctgacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatatgtagtcacctacaggcttatctataaagaatgttatgatcaatagcctgacatg 324

                                                                       
Query: 125 gattgacaagtgggtagtattgtacccaattatatacttgtagtatataatttattctct 184
           ||||||||||||||||||||||||||   |||          ||||||||||||||||||
Sbjct: 325 gattgacaagtgggtagtattgtacc---tta----------gtatataatttattctct 371

                                                                       
Query: 185 tacaacattgatgaatacaacattgatgtctgcaaagttctcttattaaaagaattttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tacaacattgatgaatacaacattgatgtctgcaaagttctcttattaaaagaattttaa 431

                                                                       
Query: 245 aacaaaaatatattctcaatatgtacatacaaagttataaatgcatcttcttaaaatttt 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 432 aacaaaaatatattctcaatatgtacatacaaagttaaaaatgcatcttcttaaaatttt 491

                                                                       
Query: 305 ccacctgaagagatttacctttcagcttccatcttttaaaactcatgtctgtgtgtggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccacctgaagagatttacctttcagcttccatcttttaaaactcatgtctgtgtgtggtt 551

                                                       
Query: 365 attggtgacagagaacttgattatcatatgggaggaatacggtt 408
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 attggtgacagagaacttgattatcatatgggaggaatacggtt 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)