BAC Information

Click to search

BAC

Clone NameMSMg01-392H21
ChromosomeX (Build37)
Map Location 146,989,176 - 146,989,519
singlet/doubletsinglet
Overlap geneAlas2
Upstream geneLOC382243, EG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101
Downstream geneApex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H21.T7 (MSMg01no392_h21.b1)MSMg01-392H21.TJ (MSMg01no392_h21.g1)
ACCAG494014AG494015
length769768
length of high quality
(start - end)
443 (52 - 494)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no392_h21.b1 PHD_FILE: MSMg01no392_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:02 2005CHROMAT_FILE: MSMg01no392_h21.g1 PHD_FILE: MSMg01no392_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATTTTTCCAAGACTTTTATCATGAATGGGTGTTGGA
TCTTGTCAAATGCTTTTTCTGCATCTAACAAGATGATCATGTGGTTATTG
TCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATT
AAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGA
TTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATT
TTTGCATCGATATTCATAAGATATATTGGTCTGAAGTTCTCTATCTTTGT
TTGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATG
AGTTGGGTAGAATACCTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGA
ACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCC
GTCTGGTCCTGGGCTTTTTTTTGCTGGGAGACTATTTATAACTGCTTCTA
TTTCTTTAGGCGATAGGGGACTGTTCAAAAGGCCAACTTGATCCTGAATC
CACTTTCGAACCTGGTATTCGTCCCAAAATTTGTCCCTTTCTCCCCCGGT
TCCCCGCTTTGTTGAAAAAACCCTTTTTCCAAAGAAGAATGGGGTTTTGT
CTCCTTCCCCGCCTTTTTTTACGCCCCCCTTTTCTTCTTTCTATTATGGC
ATCTTCCCCCCCCTCCCGN
ATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTACTATCTGTTTGTGACAGATGAAGTG
ACTGGGGCATGAAAAGAATGGCTAGCTGGACCAAGGTCTTATAGCAAATT
AATGCCCAGCAAGAAAGTGAGTGATACATTTGGTGTAGATAATGAAAAAG
GTAAAACCATTGGATTTTCTTTGTGTATATTCATGTGGATGTAAAGCTAG
CATGCAGACTAAACCAGAAGAATACAAAAGCCATAGAAACAACCTGAATT
ATTATGAATAATGCTGTATCCACACCACAGAACAGAATTTAGCCATTAAT
ATTGATTATGCAGCTCTGTATGGATGGACACAAAGAGATAATTAATATGA
GGTCACATTGACAATTGGACAAAGCAGACAGTGATTATGATAATGAGAGG
GGATGGCAAATTCTCTCTTTCCGCGCGTGAATGTGCGTGTGCCTGTGTCC
GCCCCTCCGTTCCTGCCACCCTCATTATTATATCATTGCTTTTCCCTCCC
CCATCTCCTCTTATTCCTCCCCCTTTTCTCTTCTCCCTCCCCTTTCCCTT
ATTCCTCCCCTTTTCCCCCTCCTCCTCTTTTTTACTCTCTTCTTTTTTCG
CTTCCTTCTCTCCCTCCTCACCTCCTTCCCCCTCCCCTTCCTCTTTTATC
TCCTCTCTATCTCCATTTTCATCTCCCTTCCCCCTCCCTTTTCATCCTCC
CCTTTTTCCCCCTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h21.g1 MSMg01no392_h21.g1 CHROMAT_FILE:
MSMg01no392_h21.g1 PHD_FILE: MSMg01no392_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:02 2005
         (344 letters)



>mm_chrX_146988892_146989635
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttactatctgtttgtgacagatgaagtgactggggcatgaaaagaatggctagctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgttactatctgtttgtgacagatgaagtgactggggcatgaaaagaatggctagctgga 569

                                                                       
Query: 61  ccaaggtcttatagcaaattaatgcccagcaagaaagtgagtgatacatttggtgtagat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 568 ccaaggtcttatagcaaattaatgcccagcaaggaagtgagtgatacatttggtgtagat 509

                                                                       
Query: 121 aatgaaaaaggtaaaaccattggattttctttgtgtatattcatgtggatgtaaagctag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatgaaaaaggtaaaaccattgcattttctttgtgtatattcatgtggatgtaaagctag 449

                                                                       
Query: 181 catgcagactaaaccagaagaatacaaaagccatagaaacaacctgaattattatgaata 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catgcagactaaaccggaagaatacaaaagccatagaaacaacctgaattattatgaata 389

                                                                       
Query: 241 atgctgtatccacaccacagaacagaatttagccattaatattgattatgcagctctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgctgtatccacaccacagaacagaatttagccattaatattgattatgcagctctgta 329

                                                       
Query: 301 tggatggacacaaagagataattaatatgaggtcacattgacaa 344
           ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 tggatggacacaaagagataattaatatgaggtcacattcacaa 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)