Query= MSMg01no393_d14.b1 MSMg01no393_d14.b1 CHROMAT_FILE:
MSMg01no393_d14.b1 PHD_FILE: MSMg01no393_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:04 2005
(589 letters)
>mm_chrX_138413245_138414233
Length = 989
Score = 1089 bits (563), Expect = 0.0
Identities = 583/599 (97%), Gaps = 15/599 (2%)
Strand = Plus / Plus
Query: 4 ggaattcattggtcttggctaatgctagaaaatgttataacttggaacagtatggtatta 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ggaattcattggtcttggataatgctagaaaatgttataacttggaacagtatggtatta 248
Query: 64 aagaaaaaagcatttattcccttctctgcaaagtatgttaaaagcccagagccattttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagaaaaaagcatttattcccttctctgcaaagtatgttaaaagcccagagccattttcc 308
Query: 124 aaatatacttatagaattttatgaagcaaaaaggaacaggtacaaagtgagcaaaataat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaatatacttatagaattttatgaagcaaaaaggaacaggtacaaagtgagcaaaataat 368
Query: 184 agctaaaaattacaggtatggagacctcatgcttggatagtttttctagaatttccagct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agctaaaaattacaggtatggagacctcatgcttggatagtttttctagaatttccagct 428
Query: 244 ctatgaacatcccacttcaaatataaaagggaactttggcttctagtttccaatcaagtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctatgaacatcccacttcaaatataaaagggaactttggcttctagtttccaatcaagtg 488
Query: 304 atggcaaaggagtcatatatatcttcttccaaaaaactcagttagattaggaaagtagtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atggcaaaggagtcatatatatcttcttccaaaaaactcagttagattaggaaagtagtc 548
Query: 364 tacattttacatataacaatgacaacaacagcaataataataataataataataataa-- 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacattttacatataacaatgacaacaacagcaataataataataataataataataata 608
Query: 422 -------------atagttttgcagggcaaggtattatttggtctaagtatattaaacct 468
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ataataataataaatagttttgcagggcaaggtattatttggtctaagtatattaaacct 668
Query: 469 tagaatccatcatctacctagggatgccataacaaatctatgtccatgaagaatttgcca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tagaatccatcatctacctagggatgccataacaaatctatgtccatgaagaatttgcca 728
Query: 529 ggcagaagcagtcagtgttttaacaacatatatatatatatatatatatatatatatat 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggcagaagcagtcagtgttttaacaacatatatatatatatatatatatatatatatat 787
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatatg 588
|||||||||||||||||||||||||||||||||
Sbjct: 787 atatatatatatatatatatatatatatatatg 755
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 789 atatatatatatatatatatatatatatatat 758
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 791 atatatatatatatatatatatatatatatat 760
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 793 atatatatatatatatatatatatatatatat 762
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 795 atatatatatatatatatatatatatatatat 764
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 797 atatatatatatatatatatatatatatatat 766
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 799 atatatatatatatatatatatatatatatat 768
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 556 atatatatatatatatatatatatatatatat 587
||||||||||||||||||||||||||||||||
Sbjct: 801 atatatatatatatatatatatatatatatat 770
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 557 tatatatatatatatatatatatatatatat 587
|||||||||||||||||||||||||||||||
Sbjct: 802 tatatatatatatatatatatatatatatat 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 10
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_d14.g1 MSMg01no393_d14.g1 CHROMAT_FILE:
MSMg01no393_d14.g1 PHD_FILE: MSMg01no393_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:04 2005
(479 letters)
>mm_chrX_138625914_138626792
Length = 879
Score = 880 bits (455), Expect = 0.0
Identities = 473/479 (98%)
Strand = Plus / Minus
Query: 1 cacacagaagtcatgggatttcctaaatcctagttctgtcagatgatgtgacatgtgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cacacagaagtcatgggatttcctaaatcctagttctgtcagatgatgtgacatgtgtca 620
Query: 61 gaagaactacacgacctttatcagagcctgaagacagaggagcaggcgatggggtggtag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaagaactacatgacctttatcagagcctgaagacagaggagcaggcgatggggtggtag 560
Query: 121 aggcaaggactgaggtgtcagcatttgtcatctcgagttatccatgcttgctgactttac 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggcaaggactgaggcgtcagcatttgtcatctcgagttatccatgcttgctgactttac 500
Query: 181 atctttcactcattcttctttatctactttctcattgtggtcctcagacttgcattctta 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 atcattcactcattcttctttatctactttctcattgtggtcctcagacttgcatcctta 440
Query: 241 ctctctgagtcgaagtcaactgggtccctatctttggtttacttgattttaccgagggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctctctgagtcgaagtcaactgggtccctatctttggtttacttgattttaccgagggtg 380
Query: 301 atactgataactactctgtgtcctcaaagtacacaaagttcttaggagcttgtaagtcat 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataatgataactactctgtgtcctcaaagtacacaaagttcttaggagcttgtaagtcat 320
Query: 361 tatgacctatttcctttctgattgtcctgtaagtcttgtggattctcagagattgtcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatgacctatttcctttctgattgtcctgtaagtcttgtggattctcagagattgtcctt 260
Query: 421 gatactcttcattctgaagaaattcattttacttctatatcttcactcctatgctcttg 479
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtactcttcattctgaagaaattcattttacttctatatcttcactcctatgctcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
