BAC Information

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BAC

Clone NameMSMg01-394K21
ChromosomeX (Build37)
Map Location 164,092,891 - 164,093,299
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream geneLOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K21.T7 (MSMg01no394_k21.b1)MSMg01-394K21.TJ (MSMg01no394_k21.g1)
ACCAG495679AG495680
length782798
length of high quality
(start - end)		483 (50 - 532)409 (76 - 484)
definitionCHROMAT_FILE: MSMg01no394_k21.b1 PHD_FILE: MSMg01no394_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:09 2005CHROMAT_FILE: MSMg01no394_k21.g1 PHD_FILE: MSMg01no394_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCCATTCCTAGACATGATAAAAGCAATCTACAGCAAA
CCAATAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACC
TTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAGCAAAAGGAGATCAAG
GGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATTA
TATGATAGTATATATAAGTGACCCTAAAAATTCCACGAGAGAACTCCTAA
GCCTGATAAACAGCTTCAATGAAGTAGCTGGATATCAAATTAACTCAAAC
AAGTCAATGGACTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGAAAC
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTG
GTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAG
TCTCTAAAGAAAGAAATTAAAGAAGATCTCCGAAGATGGGAAGACCTCCC
ATGCTCATGGATTGGCAGGATCAACATTGTAAAATGGCTATCTTGCCCAA
AGAATCTACCGATTCTATGCGATCCCCATCCAAATTCCAACCCATTTCTC
TACGAATTAAAAAGGACAAACGGGCCAATCTTTCTGGGAAAACAAAAAAC
CGAGGAAAGGAAAAATTCCTCCCTAGGAAAAA

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGCATCCCTGATCCCTCAAAGACC
TCTGGCCATCCCAAGTGACAGGCATAGCTCATTAAAATTGCCTCAGAGTC
AATACCCACGCCTACACAGTTCCTTACTGCAGACAGAATAGCGACTAAAA
ACTGGTTGAATACTCTGGATTCAATGATCTCTGTTTCCTTTTGGTTTCCA
AACAATGTGCTAAAGATGATTTATGAGGTTTTAATGACATCTTTAGCAGT
GAGTTACCATTGGGTTATAGAATAAGCCTCTTTGGAGCACCCAGGGTACC
ATCCAGCAGGCCTTTGTGAGCAATAGCATTCACTTTATCTTGCCATCCCT
ATCAGTCAGCCTCCTGCATCCCTGACAAAGGATTTGGTTTTCTTGTTTGA
ATGCCCACAAAAGAGCGCCTGCAGGTCCTGTGGTGATGGCCTAGACTGAC
AGATTGCTTGGTTCACAAATGTAGCCTGCAGGCCTTTAGCAGTTAAGGAT
GAGCTGTGGTATAAACAAAAGGAGTCTTCCTGAATGGAGAGCCCCAGGCA
TTGCTCCGATATTCCCATTAATGTGAGGTTTTGGTCACAACAAGGCTTGA
AAAAAAATGCCCAATAAAAAGGAGAAGAAAAATTCCCTTTGAGTAATTTA
AAGGCCGCTTTTGAACCCCCTTTCCCAATTTTAAGTTTATTTTAAAGAAG
GCGAAAAAAAAAAAATTCCCCCCCCTTGGAACTTAAATCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k21.g1 MSMg01no394_k21.g1 CHROMAT_FILE:
MSMg01no394_k21.g1 PHD_FILE: MSMg01no394_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:09 2005
         (409 letters)



>mm_chrX_164092691_164093499
          Length = 809

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcatccctgatccctcaaagacctctggccatcccaagtgacaggcatagctcattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aggcatccctgatccctcaaagacctctggccatcccaagtgacaggcatagctcattaa 550

                                                                       
Query: 61  aattgcctcagagtcaatacccacgcctacacagttccttactgcagacagaatagcgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aattgcctcagagtcaatacccacgcctacacagttccttactgcagacagaatagcgac 490

                                                                       
Query: 121 taaaaactggttgaatactctggattcaatgatctctgtttccttttggtttccaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taaaaactggttgaatactctggattcaatgatctctgtttccttttggtttccaaacaa 430

                                                                       
Query: 181 tgtgctaaagatgatttatgaggttttaatgacatctttagcagtgagttaccattgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtgctaaagatgatttatgaggttttaatgacatctttagcagtgagttaccattgggt 370

                                                                       
Query: 241 tatagaataagcctctttggagcacccagggtaccatccagcaggcctttgtgagcaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatagaataagcctctttggagcacccagggtaccatccagcaggcctttgtgagcaata 310

                                                                       
Query: 301 gcattcactttatcttgccatccctatcagtcagcctcctgcatccctgacaaaggattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcattcactttatcttgccatccctatcagtcagcctcctgcatccctgacaaaggattt 250

                                                            
Query: 361 ggttttcttgtttgaatgcccacaaaagagcgcctgcaggtcctgtggt 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggttttcttgtttgaatgcccacaaaagagcgcctgcaggtcctgtggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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