Query= MSMg01no396_i23.b1 MSMg01no396_i23.b1 CHROMAT_FILE:
MSMg01no396_i23.b1 PHD_FILE: MSMg01no396_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:43 2005
(631 letters)
>mm_chrX_75556817_75557847
Length = 1031
Score = 1129 bits (584), Expect = 0.0
Identities = 611/628 (97%), Gaps = 14/628 (2%)
Strand = Plus / Plus
Query: 5 gaattcagattttctttcctatttaaagatactatataaaagtttaaaaataaattaaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 217 gaattcagattttctt-------------tactatataaaagtttaaaaataaattaaaa 263
Query: 65 tgaactttcctgatattatatgtgactcaacaactccacagttaaatttattgtatttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaactttcctgatattatatgtgactcaacaactccacagttaaatttattgtatttta 323
Query: 125 tcataagaaaatttagagaagcaaattatgagcaataacagaattgcaaattcatagaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcataagaaaatttagagaagcaaattatgagcaataacagaattgcaaattcatagaca 383
Query: 185 acatagatatagcaacaagaaagataaaaataaaaaaaaa-tatacgaggaaattaatgt 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 acatagatatagcaacaagaaagataaaaataaaaaaaaattatacgaggaaattaatgt 443
Query: 244 cttaatagaaattaaataaaaatacaaagaaaaacttttatcttggtgacatgcatagtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttaatagaaattaaataaaaatacaaagaaaaacttttatcttggtgacatgcatagtt 503
Query: 304 cacttattatttcaaatatgtcacttccaacttttttgacaggtcttaatttgtagtggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacttattatttcaaatatgtcacttccaacttttttgacaggtcttaatttgtagtggt 563
Query: 364 actactagacttgagaactgctcattaaaatagtcatagacaatatgagatgaaaagaag 423
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actgctagacttgagaattgctcattaaaatagtcatagacaatatgagatgaaaagaag 623
Query: 424 gaacataaattttgataaatgtactatctacgtctcaatggggcacaattcttgagttat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaacataaattttgataaatgtactatctacgtctcaatggggcacaattcttgagttat 683
Query: 484 tgttttacttatctccatgtaggaaataacaagaagaatttaaataatttgaaacttaga 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttttactgatctccatgtaggaaataacaagaagaatttaaataatttgaaacttaga 743
Query: 544 ttctacttctattaaccaaaattttatatgacataaacttgtacagtaaactattttttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttctacttctattaaccaaaattttatatgacataaacttgtacagtaaactattttttc 803
Query: 604 ctaagttcaatatatatttattataata 631
||||||||||||||||||||||||||||
Sbjct: 804 ctaagttcaatatatatttattataata 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_i23.g1 MSMg01no396_i23.g1 CHROMAT_FILE:
MSMg01no396_i23.g1 PHD_FILE: MSMg01no396_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:43 2005
(495 letters)
>mm_chrX_75781673_75782569
Length = 897
Score = 932 bits (482), Expect = 0.0
Identities = 492/496 (99%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 1 acgtacattttcttctgaaaggatgtatctttcatacagttatgaagttgaaaactagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 acgtacattttcttctgaaaggatgtatctttcatacagttatgaagttgaaaactagta 778
Query: 61 aatcgatccattgaatgtcaagaaccatgtgtataatgtttcacatatatgtatatatat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aatcgatctattgaatgtcaagaaccatgtgtataatgtttcacatatatgtatatatat 718
Query: 121 ttatatatttaatatatatattaaatgaaaggatgtcacaattatactatgtagaaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttatatatttaatatatatattaaatgaaaggatgtcacaattatactatgtagaaacct 658
Query: 181 ttgtatatttttgtgattagattatttatcaatttagttcagctttttttggtatccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttgtatatttttgtgattagattatttatcaatttagttcagctttttttggtatccaaa 598
Query: 241 tttattgaggtgtaattgatgtaaattgttatcatatttatgtatgaagataaatttgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tttattgaggtgtaattgatgtaaattgttatcatatttatgtatgaagataaatttgga 538
Query: 301 aacattttgaatgtatatatctacccacaaagttgttttcacagtcaagctaatgaatga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 537 aacattttgaatgtatatatctacccacaaagttgttttcacagtcaagctagtgaatga 478
Query: 361 ataagctgtcacactcccatgccttctttaaaaaagcttttcctttgtaatctctccttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ataagctgtcacactcccatgccttctttaaaaaagcttttcctttgtaatctctccttt 418
Query: 421 cattatttattttttgagaaaactcctaatgtagcccaagactggccttgaaatggtgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cattatttattttttgagaaaactcctaatgtagcccaagactggccttgaaatggtgct 358
Query: 481 ttttt--ccccattgg 494
||||| |||||||||
Sbjct: 357 ttttttcccccattgg 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 897
Length adjustment: 10
Effective length of query: 485
Effective length of database: 887
Effective search space: 430195
Effective search space used: 430195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
