BAC Information

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BAC

Clone NameMSMg01-396M16
ChromosomeX (Build37)
Map Location 124,041,879 - 124,042,378
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik
Downstream gene4930412D23Rik, LOC385523, LOC100040516, Mdm4-ps, EG237030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396M16.T7 (MSMg01no396_m16.b1)MSMg01-396M16.TJ (MSMg01no396_m16.g1)
ACCAG497283AG497284
length766759
length of high quality
(start - end)
273 (35 - 307)499 (63 - 561)
definitionCHROMAT_FILE: MSMg01no396_m16.b1 PHD_FILE: MSMg01no396_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:01 2005CHROMAT_FILE: MSMg01no396_m16.g1 PHD_FILE: MSMg01no396_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCATACATCCGCGGAATTCTCAACT
TTTCCTACCGAATGACTGAGAAGCACCTGAAAAAAATGTTCAACATCCTT
AATTACCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTAAGAATGGCTAAGATCAAAATTTCAGGTGACAGCAGATGCTTGCAA
GGATGTGGAGAAAAAGGAACACTCCTCCATTTCTGGTAGGATTGCAAGCT
GGTACAATCACTCTGGAAATCAGTCCTGCAGTTCCTCAAAAAATTGGACA
TAGTAGTATCTGATGATACAACAATACCGCTCCTAGGCATATACCCAGAA
GATGTTTCAACTTGTAATAAGAATACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAACCTGGAAATAACCCAGATGTCCCTCAACAT
AGGAATGGATACAGATAATGTGGAACATTTACATAATGGAGTACTACTCT
GCAATTAANAACAATGAATTTATGAAAATCTTATGCTCATGGATGGATCT
CAAGGGTATCTTCCTGAGAGAGGAACCCCACTTACCAAAGAATTCCCTTG
ATAGGACCCCCCACAAAACGAAAAAAGTCCCCAAAATTATAATTCCCTTT
TTGTCTCTCCCCATCTTTTGAAATTAAAAAAAAAGAAAACCAAGGGGGGG
AACTCCTTTCTTTCTTCTTGGGGACAAATAATCCTGTGGGGGGGGTTCAA
CACAATTTTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCCTGGTAGCATTGACTATGTATTTTTCTTAATGATT
TGTGACACTTGACAACTTTTTTTCCTTGAGACAGAAATAATTATAAGGAA
GTAATCTAAAAGATTCACACCCATTTTTAAAGAAATATACTTATTGCTTT
CATTCTCCAAAAATATAAGGCAAATGTAAGGTGTAAACAAAAATGTAATG
AGTAAAACCATTAAGAACAATTATGAAAAGTGAGTTGCTGAGTCATTGAA
AAATTATGTCCTTTTGTAGAGATTGTCCCAACTTGCATTCTAAGTGCATT
TATAAATTCACAGTAGATTTGAAGTACTAAACTGGTAATAAGTACTATTA
CAATTTCCTATTCAAGTAAAGGTATAATTTTTTATTATAAATAAAGGATC
AATAAGTAAAATGTCAGAATCCTGGCATCCAAATTCAAATCAAGTGAACA
ATATCCTTATCAAATAACTGTGTATCCAATGTTACTGTTTTACTTATATA
GTTCTTCCAATAACACAATTATAATTGTCATGATAACAATTAGAGAACAT
ATATTTTTAAATTATATTTTTAAAAAGAATTATTTAAAAACTTAATCTAT
TTTATCTTTTTAAGGAGAGATATGATGAAATATTTTCCCCTTCCTTCCAA
CCTTTTCTAATAATGGATTCCTAAAATAAAAAATACCTCTTATATTGAGG
GTCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_m16.g1 MSMg01no396_m16.g1 CHROMAT_FILE:
MSMg01no396_m16.g1 PHD_FILE: MSMg01no396_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:01 2005
         (499 letters)



>mm_chrX_124041680_124042578
          Length = 899

 Score =  936 bits (484), Expect = 0.0
 Identities = 496/500 (99%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctggtagcattgactatgtatttttcttaatgatttgtgacacttgacaactttttt 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctcctggtagcattgattatgtatttttcttaatgatttgtgacacttgacaactttttt 259

                                                                       
Query: 61  t-ccttgagacagaaataattataaggaagtaatctaaaagattcacacccatttttaaa 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttccttgagacagaaataattataaggaagtaatctaaaagattcacacccatttttaaa 319

                                                                       
Query: 120 gaaatatacttattgctttcattctccaaaaatataaggcaaatgtaaggtgtaaacaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaaatatacttattgctttcattctccaaaaatataaggcaaatgtaaggtgtaaacaaa 379

                                                                       
Query: 180 aatgtaatgagtaaaaccattaagaacaattatgaaaagtgagttgctgagtcattgaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatgtaatgagtaaaaccattaagaacaattatgaaaagtgagttgctgagtcattgaaa 439

                                                                       
Query: 240 aattatgtccttttgtagagattgtcccaacttgcattctaagtgcatttataaattcac 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aattatggccttttgtagagattgtcccaacttgcattctaagtgcatttataaattcac 499

                                                                       
Query: 300 agtagatttgaagtactaaactggtaataagtactattacaatttcctattcaagtaaag 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 agtagatttgaagtactaaactggtaataagtactattataatttcctattcaagtaaag 559

                                                                       
Query: 360 gtataattttttattataaataaaggatcaataagtaaaatgtcagaatcctggcatcca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtataattttttattataaataaaggatcaataagtaaaatgtcagaatcctggcatcca 619

                                                                       
Query: 420 aattcaaatcaagtgaacaatatccttatcaaataactgtgtatccaatgttactgtttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aattcaaatcaagtgaacaatatccttatcaaataactgtgtatccaatgttactgtttt 679

                               
Query: 480 acttatatagttcttccaat 499
           ||||||||||||||||||||
Sbjct: 680 acttatatagttcttccaat 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)