BAC Information

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BAC

Clone NameMSMg01-397C02
ChromosomeX (Build37)
Map Location 110,046,798 - 110,047,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428
Downstream geneLOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C02.T7 (MSMg01no397_c02.b1)MSMg01-397C02.TJ (MSMg01no397_c02.g1)
ACCAG497542AG497543
length7731,461
length of high quality
(start - end)
478 (45 - 522)---
definitionCHROMAT_FILE: MSMg01no397_c02.b1 PHD_FILE: MSMg01no397_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:27 2005CHROMAT_FILE: MSMg01no397_c02.g1 PHD_FILE: MSMg01no397_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGGTTCTAGCCCTCACAGCTTTCCTTTTATATTTCAACTTCTAA
GTTTGCCAGATCCCTCCAGCTAACACCACCCCCTACAAGCATCTTCAACA
TTTATTTTACTACAGAAAGCAATTCAGTTATATATTCCACACACTTAAAA
GCTTAAACTACAGACATTTATTTCTGACAGTTGTGGAGGTTGAGTGGTCA
AAGGTCAAGGTGCTAGTAGAGTGGATTTTCCTCAGTACTTTCTCCTATCT
CCCTGGCCTCCAAATAGCATCCTTACTGCATTGTACAGTAAGCTTTACTT
GGTAGAGCCTGTGCCTGTTATCACTTCCTTTTCTAAGAAAGATAATATCC
TATTTAATTCAGGCCATACCCTTATAACCTAATATAACAAAAATCTCAAA
TCAGACTTACACAGAGTTTAAAACAAAAGATAGAGAGGAGAAGGAAGGGG
ATAATGCAATTTTATTTAGTTTACCCTTTCGCCCCCATCCAACTCATTTC
CTCTATTCCCCTTCCTATCCCCTCCTTTTTGCCTTATTCCCTCCCACCCC
CCCTCTGTCCTTCCCTCATTTCCCCGTAATTCTTTTTTTTCCCCTTACTC
CCCCCCTTTTTTCTTCCCCCCCGATATTATCACAGGTGCCTAATTCCTGT
ACCTTTCTCCATTATCGTGTGCCGCCCTTATCCCCCTGCCCCTATGCTTC
CTCTTCCTTGTGTGCCCTTCTTC
CCTACTCCACTACACGTCTCAATGAACCTGTATCGGCGATATACGGACTT
CTCCACCTTCATAGCGGNAGTGTTAGCGACCCGCGCAGATATACTGTTAT
ATCCTACCTACCGCGAACAGACACTTACGCACATCTCACCTTTCTCCTAT
ATACCTCGATTGAAACTGTCATGTAATAGGATAATATGACGACATCTATG
ACGACGCGGCTTGGAAATGTGCNGTATATAACGCCGCCTGAGCCGCACAG
ATACGCTATTAACACGCAACAGATACCGTACCATCGTCGTATGACGACCG
TTCGTTGAATAAGAACGACGTGTGATTCAGAGTGAATACACGACGAGATA
GTGTAATAGTATAGCGTACGTCATTATTATCCTATCTCGTCTCGACAACA
TCATACACACATCATGACCACGAGGCGTAAGCATTATATCAGTGATAATA
GCAATATAACTATGACGATGCGACTTGTAGAATCGCGCGGATAGGAAGAC
CGCGCCGTCTCGTCTTAACATAAGTAACACACATGAGCGCACCTTCCGTT
TGCTACGCTTTTCTCGATTATCGTGGCTGCTGTGATATTCTCTTATTATA
CCGAGCGTTATCCGAACGCGCGCGTGCCTAGACGATAAGCGGACAGTACT
AATATGAATGAATCGTGCGCTGTNCACTGCGAGAACAGAGCGCCGCGCGT
ACACATACGCGAAGGAGAGTGACATGCACACCCAGCAGTACATCAACGGA
CGGGAGCGATATATATTGTATCGTGCGACGCTGTCTGTCGTCGTCTCACT
TNTTTGTCATTACACTCGCGTGAACCAATCACGCATTATGTAACCGCATC
GATNCATCTCACACCTACAGCGGGTGCCGANATCTATGATATTATATGTC
ACATCATAGCGACGCGCTCCCGCACGCTTAGCCGCTTTGATCGGCAGTAT
CGTGCGTGGAGTAATAGATACAGACCGCGACGCGCATCGCAATCGGGACA
CTACGCATCGATCGAACGAGCATAGTGTTAATGGACTCGACTACTCGCGA
GTGTTGTGCACCGAGCAGTGTCAGCACATACTGTTCGGCGATAGCTCTCG
CGAATACAGTATGTTATTACATCANATACACTAGCGACGAGTGTGTACGA
TCAGTATGTACGCACGGACATACGAGATGACGCTAGTCGAGTACTACATA
TATCATTCGAGTCCGCACATCACGATACACAACTAANTAGGCAGTACTAT
TTCTCGTATGTATGTGTAGNCGTCATGCAACGCTGCCATACCATACCACG
CGCACACATAGACCCGTGTTATATCACGCCAGATATCATCATAATCATCC
CTCTTCGTAGCTTGCGTCAGTCGCTAGAATCGTCTNTACATCTTCGCNAC
CTAACAAGGTGTCNTNTCACTACTTATTTCTTGATGTACATATTCACAGT
ACTATGATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c02.b1 MSMg01no397_c02.b1 CHROMAT_FILE:
MSMg01no397_c02.b1 PHD_FILE: MSMg01no397_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:27 2005
         (478 letters)



>mm_chrX_110046595_110047472
          Length = 878

 Score =  795 bits (411), Expect = 0.0
 Identities = 458/475 (96%), Gaps = 3/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaggttctagccctcacagctttccttttatatttcaacttctaagtttgcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattctcaggttcaagccctcacagctttccttttatatttcaacttctaattttgcc 263

                                                                       
Query: 64  agatccctccagctaacaccaccccctacaagcatcttcaacatttattttactacagaa 123
           |||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct: 264 agatccctccagctaacaccactccctacaagcatcatcagcatttattttactacagaa 323

                                                                       
Query: 124 agcaattcagttatatattccacacacttaaaagcttaaactacagacatttatttctga 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 agcaattcagttatatattccacacacttgaaagcttaaactacagacatttatttctga 383

                                                                       
Query: 184 cagttgtggaggttgagtggtcaaaggtcaaggtgctagtagagtggattttcctcagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagttgtggaggttgagtggtcaaaggtcaaggtgctagtagagtggattttcctcagta 443

                                                                       
Query: 244 ctttctcctatctccctggcctccaaatagcatccttactgcattgtacagtaagcttta 303
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 444 ctttctcctatctccctggcctcaaaatagcatcctcactgcattgtacagtaagcttta 503

                                                                       
Query: 304 cttggtagagcctgtgcctgttatcacttccttttctaagaaagataatatcctatttaa 363
           ||||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 504 cttggtagagcctgcacctgtta---cttccttttctaagaaagataatatcctatttaa 560

                                                                       
Query: 364 ttcaggccatacccttataacctaatataacaaaaatctcaaatcagacttacacagagt 423
            ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gtcaggccatacccttatcacctaatataacaaaaaactcaaatcagacttacacagagt 620

                                                                  
Query: 424 ttaaaacaaaagatagagaggagaaggaaggggataatgcaattttatttagttt 478
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ttaaaacaaaagatagagaggagaaggaaggggataatgtaattttatttagttt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)