ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCACTCCATTACCAAAAGCATACAGTCTTAGCTCCTGTTTGTGGGACACT
GGCAAGATCTGGCCCTAAGGTCAGCACATTGAAGCACTGATTAGAATGAT
CCTAGGCAGCTCTTGCTACAGCTCCTCCTCTGGGAAGGCCTTGACAGCTT
GGTGACCCTGTCGCTCTCCACAGACCCTCCTTCAGCTACCTCTTGTGGCA
GCTGCCTGAACAAACATTACATCCTTAATGTTTGCTGCCGGATCCCAGCC
AAGGAAGTCATAACAGGACTATAGACTCACTATCTGATAACCTTGTTAGC
TCAAATCAAAGCTCCTAACAAATAGGAGATGTTATTAAAGTGGAATAAAA
CCATTGTGGTAGTTGCGTGTGTTGACGTGGCTTCTCAGTTATTTTTCCCT
TTGGAAAAAAAAAGTAGCATTTCTTGTCCCTTTATTTAAGATTAAAACCA
GGCACAAGGACATGAAACAAAATAACATGTACAAGGTTAAGGTTAACTTT
AAAAGAATACAAATGGATAGTGATGTACAAAATTCATAATTTTCTTCTAA
TGGGAAAATAGCACATAACTATTTGCTTTGTGCTGTGAAATCTCCGGGAA
AATGTGGTAAAATATGAAAAATCCTCTTTATCCTGAGAAAGTTGAGTGTG
TGATTTATTTTGAGAAACGATAACCAGTAATGGAACTCTTTTCTACCGCA
GGTN

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTTTCAGAATGCTATCAGAAGGATAT
CTCAGTGGACTTACCTACTGGAATGACATTCATTGGAATTGTGCATCTTA
TAATGAACCGGTGGCTGGGGACCAAGGCAAAGAGACAAGTTCTGTTGCTG
CTCTTTCATATTCCTCTGTGGATGAAACACAAGTTCAAAGTCTTTATGTG
AGCTGCAAATCCTCTGGGAAGTTTATTTCATCAGTGCATGCAAGGGCGAG
TCAGCACAGCAGAATTTTTTATTAGAACAGTGCTGCAGGCAAACACCAAC
CCTGTATTTGAAAGTCCAACTTTAGCTGCAGTTGGTATATGCAGAGATGT
GATCAGGGAGACGCACTTGGTTCCACCTTCTTGTAAAAGTATTTGCAAAA
ATTACAATGACTTACATATTGCAGGGGGACAGGTGATGGCCATTAACTCA
GCAATGGCAAATTTCCCCTCTGAGAGCAGCTTTGAAGATGGTCCTTTGCT
AAAGTCATCTGAGATTTCTTTGTCCATGGAGGATTCCACTTCCACTCAGC
TCACTGAACTTCCCCTCAAACCTATCCAGCGGAACTCTCCCCATGGGATG
ATATTCTGCATCACAAACAAAAGCTACCCTGCTCATGCACAATCCTATTT
CCCATGTTTCGTTCTATGCAGCCTTGGAGCTAAACTGGGGGTAATCGCTC
ATCTTCTTCTTTTTGN

Query= MSMg01no398_d09.b1 MSMg01no398_d09.b1 CHROMAT_FILE:
MSMg01no398_d09.b1 PHD_FILE: MSMg01no398_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:53 2005
         (539 letters)



>mm_chrX_83280235_83281173
          Length = 939

 Score = 1019 bits (527), Expect = 0.0
 Identities = 536/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcatacagtcttagctcctgtttgtgggacactggcaagatctggccctaaggtcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aagcatacagtcttagctcctgtttgtgggacactggcaagatctggccctaaggtcagc 680

                                                                       
Query: 61  acattgaagcactgattagaatgatcctaggcagctcttgctacagctcctcctctggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acattgaagcactgattagaatgatcctaggcagctcttgctacagctcctcctctggga 620

                                                                       
Query: 121 aggccttgacagcttggtgaccctgtcgctctccacagaccctccttcagctacctcttg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 619 aggccttgacagcttggtgaccctgttgctctccacagaccctccttcagctacctcttg 560

                                                                       
Query: 181 tggcagctgcctgaacaaacattacatccttaatgtttgctgccggatcccagccaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tggcagctgcctgaacaaacattacatccttaatgtttgctgccggatcccagccaagga 500

                                                                       
Query: 241 agtcataacaggactatagactcactatctgataaccttgttagctcaaatcaaagctcc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtcataacaggacaatagactcactatctgataaccttgttagctcaaatcaaagctcc 440

                                                                       
Query: 301 taacaaataggagatgttattaaagtggaataaaaccattgtggtagttgcgtgtgttga 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taacaaataggagatgttattgaagtggaataaaaccattgtggtagttgcgtgtgttga 380

                                                                       
Query: 361 cgtggcttctcagttatttttccctttggaaaaaaaaagtagcatttcttgtccctttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cgtggcttctcagttatttttccctttggaaaaaaaaagtagcatttcttgtccctttat 320

                                                                       
Query: 421 ttaagattaaaaccaggcacaaggacatgaaacaaaataacatgtacaaggttaaggtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttaagattaaaaccaggcacaaggacatgaaacaaaataacatgtacaaggttaaggtta 260

                                                                      
Query: 481 actttaaaagaatacaaatggatagtgatgtacaaaattcataattttcttctaatggg 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actttaaaagaatacaaatggatagtgatgtacaaaattcataattttcttctaatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no398_d09.g1 MSMg01no398_d09.g1 CHROMAT_FILE:
MSMg01no398_d09.g1 PHD_FILE: MSMg01no398_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:53 2005
         (245 letters)



>mm_chrX_83132959_83133603
          Length = 645

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttcagaatgctatcagaaggatatctcagtggacttacctactggaatgacattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttcagaatgctatcagaaggatatctcagtggacttacctactggaatgacattca 260

                                                                       
Query: 61  ttggaattgtgcatcttataatgaaccggtggctggggaccaaggcaaagagacaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaattgtgcatcttataatgaaccggtggctggggaccaaggcaaagagacaagttc 320

                                                                       
Query: 121 tgttgctgctctttcatattcctctgtggatgaaacacaagttcaaagtctttatgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgctgctctttcatattcctctgtggatgaaacacaagttcaaagtctttatgtgag 380

                                                                       
Query: 181 ctgcaaatcctctgggaagtttatttcatcagtgcatgcaagggcgagtcagcacagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcaaatcctctgggaagtttatttcatcagtgcatgcaagggcgagtcagcacagcag 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)