BAC Information

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BAC

Clone NameMSMg01-398F07
ChromosomeX (Build37)
Map Location 157,013,726 - 157,014,050
singlet/doubletsinglet
Overlap genePhka2
Upstream geneA830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64
Downstream genePpef1, Rs1, Gja6, Scml2, LOC414364, Prkaca-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398F07.T7 (MSMg01no398_f07.b1)MSMg01-398F07.TJ (MSMg01no398_f07.g1)
ACCAG498457AG498458
length762817
length of high quality
(start - end)
499 (68 - 566)229 (85 - 313)
definitionCHROMAT_FILE: MSMg01no398_f07.b1 PHD_FILE: MSMg01no398_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:02 2005CHROMAT_FILE: MSMg01no398_f07.g1 PHD_FILE: MSMg01no398_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCTCCTGTCGCTAAACGACTCACTATTTTCCACAAATCCGCGGAATTC
CAAGAGTTATCCAAAAATAATTCAACATAGTGAAGACCATAAAATTTATT
GCTATGGCTTGATTGCTTTGTGTCCCCATCAAATCCCTATACTAAAATTC
TAACCCTGGAGTGATGGTACTGGGATATACAGCTCTTAGAAAGTGACTAA
ACCATGGTGTAAGATCCCTCATAATCTATCTGATAGTACCCTTACATGAG
AAGCCCCAGAAAGCTTGTCCCTCTTTTCTACCACGTAAGGATAGGGTGCA
AAGGCACCATCCATGATAAAGTAGGCTATCACCAGACATTTTATCTTGGA
TTTCCAACTTCTAGAACTGTAAGATACACTTCTGCTTTTTATGATGCCTG
CTGATGATGTGTTGCTATAGCAGCCCAAAGAGATTAAGGCACTTACTTCA
TTACATAAAGAATGTACAGAATGTCTGCTTGGTCCTGTAGGTTTGAGCAG
TCTTTCAGTTGCCCAACTAGCTTCTCACAGTCCACTTCATCATGGTCGTC
TCTGGGCCACTGGTAGCCATATTCAGGAGTCTGGCCACATAAAAGCCATA
AGAATGGAAAGGGATTAAGAATGGTAACTTTCAGATGACCATAAGCGAAA
CACTAACTTTGTTTCTCAATGCTAGCATTATGCTAGGCTTCTTTTTTTTC
CAGTAAATCTTTTGTACTGGAATAGTTACCCCCCTTTACTATATTTGACA
TTTGCCAGGCAG
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCGAGGACTTCTCTGNTTAAGNCTGTATCCCATTTTTA
ATTGGGTTATTTGGTTTTTGATATCTAGTTTCTTGAGTTATTTATGTATT
TTGGATATTAGTCAGATGTGGAGTTGGTGAAAATATTTTCCCATTCTGTA
TGTTGCTGCTTTGTCCTTTTGATGGTGTTCTTCGCCTTACAGAAGCTTTT
TTTTATTCGTGAGGTCCCATTTATTGATTGTTGTTCTTAGTGCCTGCACT
AGCGTTCTGTTCAAATTTTANGTTGTTTGAGACAATAAGTTCAAGACCAT
TCTCCACTTTCTCTTATACCTCTCTGGTGCATTCTGAGTAGTTCTTCAAT
GGATATGGCTTTATGCCGCCGCTTTTGATCCACTTGGACTTGAGTTTTTG
TGCACCTGATCAAAATGCATTTATCTGTATTCTCCTACCTGTCCATCCCT
GTTTGATCCCACTTTTCTTTTAAACAGTGTTTCCTTTGTGCATTTCTTGA
CTTCTTCCCCCCTTTTTCCTACCCATTTTATTCTTTTTTTGTCTTATACT
TCCCGTTTTTTCTTTATCTCTTTCTTTCCCCCTCTCTTCTCTCTTTCTTT
CTCCCATCCCTTCTTTTTTTTTTTTTTTTTTTTCCCTCCTCCCCCTTCTT
TTCTCCTCCTTTCCTCTCCCCTGTTCCTCATTTCTCCCCTTTTTTTTCTT
CCTTCCTCTTCTTCTCCTTTCTTCATACATCCCACTTTACTCCTCTTCTT
CATTTTTCCCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_f07.b1 MSMg01no398_f07.b1 CHROMAT_FILE:
MSMg01no398_f07.b1 PHD_FILE: MSMg01no398_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:02 2005
         (499 letters)



>mm_chrX_157013152_157014050
          Length = 899

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 175 ttacatgagaagccccagaaagcttgtccctcttttctaccacgtaaggatagggtgcaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ttacatgagaagccccagaaagcttgtccctcttttctaccacgtaaggatagggtgcaa 840

                                                                       
Query: 235 aggcaccatccatgataaagtaggctatcaccagacattttatcttggatttccaacttc 294
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aggcaccatccatgagaaagtaggctatcaccagacattttatcttggatttccaacttc 780

                                                                       
Query: 295 tagaactgtaagatacacttctgctttttatgatgcctgctgatgatgtgttgctatagc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tagaactgtaagatacacttctgctttttatgatgcctgctgatgatgtgttgctatagc 720

                                                                       
Query: 355 agcccaaagagattaaggcacttacttcattacataaagaatgtacagaatgtctgcttg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agcccaaagagattaaggcacttacttcattacataaagaatgtacagaatgtctgcttg 660

                                                                       
Query: 415 gtcctgtaggtttgagcagtctttcagttgcccaactagcttctcacagtccacttcatc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtcctgtaggtttgagcagtctttcagttgcccaactagcttctcacagtccacttcatc 600

                                    
Query: 475 atggtcgtctctgggccactggtag 499
           |||||||||||||||||||||||||
Sbjct: 599 atggtcgtctctgggccactggtag 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)