BAC Information

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BAC

Clone NameMSMg01-399A01
ChromosomeX (Build37)
Map Location 20,336,615 - 20,336,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11
Downstream geneLOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997, Slc6a14, LOC100043180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A01.T7 (MSMg01no399_a01.b1)MSMg01-399A01.TJ (MSMg01no399_a01.g1)
ACCAG498973AG498974
length784744
length of high quality
(start - end)
202 (75 - 276)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no399_a01.b1 PHD_FILE: MSMg01no399_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:54 2005CHROMAT_FILE: MSMg01no399_a01.g1 PHD_FILE: MSMg01no399_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACCAGATCTTCACAGAAGACCTAATATCAATTTTCCTCA
AACTATTCCATAAAATAGAAACAGAAGGAACACTACCTAACTCATTCTAT
AAAGCCACAATTACTCTGGTACCTAAACCACACAAGGACCTAACCAAAAA
AGAGAACTTCAGACCAATCTCGCTTAATGAATATCGATGCAAAAATACTC
AATAAAATTCTTGCAAACTGAATTCANNNNNNNNNNNNNNNNNANNAAAA
CAAACAAAAAAAAACTCCCCCCTCCCCCCTTTCTCCTTCCCCCCCTTCCC
CCCCCTTCCTTTCCCATCCCCCCCTTTTTTTTTCTTCTTCTTCCCCCTTC
CTCTTCTTTTCTTCCTTTTCCCTTTTCCTCCCTTCCCTCTTTTTCTCTTT
NCACCCCCTCTTTTCCCTTCCCTTTTTACCCCCCCCTTCTCCTTCCTTTT
TTTATCCCTCATTTCACTCCACCCCCTCTTTCCCTCTCCCCTCTACTATT
ACCTCCCTTATTTTTTACCCTTAACCTTTCTCTTCTCCCCTTCTCCTTTC
ATTTCCCTTCTCTTTCCAACCCCGTTATTCCCTTTCTTGTTCCCCTCCTC
TCTCTCTTTTACTCCTACCCTTTTTCTTTTCCCATATCCCTTCTTACTCC
CCCTTATCTCTTCCCTTTTTCCCCCCTTTCTCCCCCACCTTTTTTACCCT
CCCCACCCTTCTCAATACTCTCTCTCTCTCTATN
CTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTAAATGCTTATTGTGAGCT
TCAGAGAGTAAGGCAATGAATAACAGCATGAAGAGACCCTTGGTTGACAT
GGCAACAACATGCAAGAGAGGATGAGACCAATAGTATATGCAGCTAGAAA
AAACAAATGAGGTCTGCCAACAAAGCCTGACAAAACTGTTTTAGTACCCA
TTTTGGGACACTCGACTCTGGAGTGCAGACTGCTTTTCTAAGTAAAGTTG
GGTTTAAATTATCTGTGCCTTTTGCCTATACCTGGAGTTATGGGTGGTTG
TGAGCCATCATCTGGTTGCTGGAAACAGACCCCAGGTCCTCTGAAAGAAT
AACAAGTACTCTTAGTTGCTGAGCCATTTCTCCATCCCCTTTAGAGATTC
TTCTAAAAAGTAGCGGATGATGTTCACTATCACCTTTCTTTTTTTCTCCT
TTTTTTGGATGTCTCGACCCTGGCCCTCTCTGCATACCCCTGGCTGCCCT
GTAACTTCCCCACCATATCATCCTGTTTCTCCCCCTTCTTAATTTTTCCG
TCCCCCCCGCCTCTCTTAGCGTTTAGGCATCTCACGCCCTCTTCCCCTCC
CCTTTTACTTGCCCCCCTTTACTTTTTCTCCTATTTTTACCGGTGACGAA
CCCCGCCTCTTTCCCCCCTTTTGTTCTCCCCTCCCTCCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a01.g1 MSMg01no399_a01.g1 CHROMAT_FILE:
MSMg01no399_a01.g1 PHD_FILE: MSMg01no399_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:54 2005
         (244 letters)



>mm_chrX_20336415_20337058
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctaaatgcttattgtgagcttcagagagtaaggcaatgaataacagcatgaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctaaatgcttattgtgagcttcagagagtaaggcaatgaataacagcatgaagaga 260

                                                                       
Query: 61  cccttggttgacatggcaacaacatgcaagagaggatgagaccaatagtatatgcagcta 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cccttggttgacatggcaacaacatgcaagagaggacgagaccaatagtatatgcagcta 320

                                                                       
Query: 121 gaaaaaacaaatgaggtctgccaacaaagcctgacaaaactgttttagtacccattttgg 180
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaacaaatgatgtctgccaacaaagcctgacaaaactgttttagtacccattttgg 380

                                                               
Query: 181 gacactcgactctggagtgcagactgcttttctaagtaaagttgggtttaaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacactcgactctggagtgcagactgcttttctaagtaaagttgggtttaaa 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)