Query= MSMg01no400_f16.b1 MSMg01no400_f16.b1 CHROMAT_FILE:
MSMg01no400_f16.b1 PHD_FILE: MSMg01no400_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:38 2005
(489 letters)
>mm_chrX_80668582_80669471
Length = 890
Score = 859 bits (444), Expect = 0.0
Identities = 474/486 (97%), Gaps = 5/486 (1%)
Strand = Plus / Plus
Query: 7 gaattctgagagttgc---cactttctctcccaccaatcattctatagacagactaagtg 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgagaga--cagacactttctctcccaccaatcattctatagacagactaagtg 264
Query: 64 agtatattatttaattcctattcttcttttcagtggacatcatgttactttggtacaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtatattatttaattcctattcttcttttcagtggacatcatgttactttggtacaaag 324
Query: 124 tcacagattctatctccctacaaggatagactccagtggagggcattctagtttactcct 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tcacagattctatctccctacaaggatagactccggtggagggcattctagtttactcct 384
Query: 184 gtactcttttatagttgagataacgacagtatggattttgaaggatagacactagatctc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctactcttttatagttgagataacgacagtatggattttgaaggatagacactagatctc 444
Query: 244 tataggcttcctcctataggacagtgaggtatatggattactattttactcctgtcttcc 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tataggcttcctcctataggacagtgaggtatatggaatactattttactcctgtcttcc 504
Query: 304 ttcatagtacagatcaaggattagatggcatagatttaaacaggaagacagtatctctta 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcatagtacagatcaaggactagatggcatagatttaaacaggaagacagtatctctta 564
Query: 364 actgtctttttccacaagacatatagaggtgtacatcataccaagccacacttatccttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 actgtctttttccacaagacatatagaggtgtacatcataccaagccacacttattcttt 624
Query: 424 tcagtaggacacatcaaggttaaaagcacatggacttttacagagacactagttccctcc 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagtaggccacatcaaggttaaaagcacatggacttttacagagacactagttccctcc 684
Query: 484 atgtct 489
||||||
Sbjct: 685 atgtct 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_f16.g1 MSMg01no400_f16.g1 CHROMAT_FILE:
MSMg01no400_f16.g1 PHD_FILE: MSMg01no400_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:38 2005
(451 letters)
>mm_chrX_80799610_80800460
Length = 851
Score = 818 bits (423), Expect = 0.0
Identities = 432/435 (99%)
Strand = Plus / Minus
Query: 1 agggatcattacagaaagctaccactggtcaaaatgctacagatgaatcttgaatccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agggatcattacagaaagctaccactggtcaaaatgctacagatgaatcttgaatccact 376
Query: 61 gtattttggaaaataaaacagacagctccctcgtacaagaaagaaatgtgaattgtggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtattttggaaaataaaacagacagctccctcgtacaagaaagaaatgtgaattgtggtt 316
Query: 121 tcaagaggctaagagactacagcatacttatgtgttatttaatgagtataccatttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaagaggctaagagactacagcatacttatgtgttatttaatgagtataccatttaaat 256
Query: 181 ttgtgaagatttctgtaggttaaggtggcagtggttgtacagtaattctacagtaatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttgtgaagatttctgtaggttaaggtggcagtggttgtacagtaattctacagtaatgta 196
Query: 241 gcagaggttgttcttgttgggcatcagtgggaagagaggcccttggtcctgtgaaggctt 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gcagaggttggccttgttgggcatcagtgggaagagaggcccttggtcctgtgaaggctt 136
Query: 301 gatgcaccagtgtagggaaatgtgagggcaaaataccattttgtggtgtgcaggttcaat 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 135 gatgcaccagtgtagggaaatgtgagggcaaaatatcattttgtggtgtgcaggttcaat 76
Query: 361 gactacatacacaacaccacccttacaccactggatcaagaaacttggtagaactggggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gactacatacacaacaccacccttacaccactggatcaagaaacttggtagaactggggt 16
Query: 421 agaaaagatagttaa 435
|||||||||||||||
Sbjct: 15 agaaaagatagttaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
