BAC Information

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BAC

Clone NameMSMg01-400I22
ChromosomeX (Build37)
Map Location 162,619,748 - 162,795,402
singlet/doubletdoublet
Overlap geneGemin8, Gpm6b
Upstream geneGlra2, LOC100040753
Downstream geneOfd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400I22.T7 (MSMg01no400_i22.b1)MSMg01-400I22.TJ (MSMg01no400_i22.g1)
ACCAG500152AG500153
length790800
length of high quality
(start - end)		453 (72 - 524)433 (83 - 515)
definitionCHROMAT_FILE: MSMg01no400_i22.b1 PHD_FILE: MSMg01no400_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:54 2005CHROMAT_FILE: MSMg01no400_i22.g1 PHD_FILE: MSMg01no400_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,619,748 - 162,620,200)(162,794,970 - 162,795,402)
sequence
GTCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGAGAATC
CGCGGAATTCACAAAGTTTCTTTCATTTCCATTTTAAAATGCCTGTGCCC
TCTTAACAGTAGATTAGGCTTTATTGATCCCCAGTAGATGCCAGGAACTG
AGCAGCAGACTTTGGATAAAGTATTGTTTCCTTTAGTATCTGCTTGTGAT
TCTTCTCTAACCACTTGTTCTCTTCGGTTTACCTATTTTCTTCTGAGTAA
ACTGTTGATTTCTTTGGCATGCTCATATTAGAAAGTATATCCAGGGGCTA
GAGAAATAGCTCAGTGGTTAGGAATACTTGCTGCTCTTGCAGAGGACACA
AGCTCCATTCCCAGCACTCACCCACCTGTAACAATAATTCCAAGAGATCC
AGTGCCCTCTTGGGACCTTCAGGAGCATGAGGCATAAACACGATTCACAA
ACATACATGTAGTGATAAAAAGAATGTATATCCAAACAACTATATGAAAG
CAATAGTTTCTGATGTGCATAGAATACATTTCTCCTTTGTTATGGTTAAT
TATTTATTTATCTGTGGGAGAGGGTGCAGTTCACAAGCTATACTTTGCCA
AAGTGGCTTTTCCCCTTATTCCACAAGGGGCCCCCGCAAATTGGCCCCTG
GTTCTCCACCCTTAATGGAAATATGTCTTTTTCCCCCCCCGGCCACTTCC
AGAAACCCTTGGATATTTTCTTTTCTCTGGGCCCTCCAAAAAAATTTTTT
ATTTTTTTCTTAAAGCCATATACATCAGTATTTTTTCTCN

ATTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGTCAGAATGT
ATGTCCATATAAACTGCTTCAGGATTTCTTTAAAAATCTACAATTTCAAA
TCAAGTACAAAGACTTTCTTTCCTCCAGGCAAGACCCTGATAGCTCCTAG
AATTTTTTCCTTATAAAACCACCAACAATTTGGATACCATAGGCAGCCTG
GATCTCTCATTATCCCTAGAATTTCAACCCCCCTGAAAATGTAAGTTTTA
AATTGGGGCAGGGAGGGCAGAGTGGACTCACCTTCCTTGGTGCTGAACTT
AAAGTGAATGGCCAATGGGCCGGGCTTTCTCAGAACAGAGCTGGGCTCTT
AAGAAAGGTGAGTGCACGGCATGTGGTGTTGGCGCCCTGGACAAGCTGTA
TCACCTTCAAAAACTCATGTTCCTCAGGGCTCCCAAACAAACCGATGCTA
GCAAAGTCTTTGAAGTATTACCGGTTTTGTTTGGATTTTTGCTTTCACTT
ACTTCCCAGCCCGAATGGGGCTTTAAAGGGCTACACTTCCGAGGTTTGGT
CGTCAGTGGCAAAGACCACCCATCTTAATCCCAAGGCTTCTTATTAAAAT
TGTTTGGAGGCTGGGGGCCTCCGAAAAAAATCAAGGTTCTCTCCTTAGAA
AAAAGACAGGGGGCTTTACTCTTACACACCGGCCCATTGGGGTGGGGCGC
CATAAAACTCTCCTATATCTCCCTATTTAGTCTTCGTGACATCCCCGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_i22.b1 MSMg01no400_i22.b1 CHROMAT_FILE:
MSMg01no400_i22.b1 PHD_FILE: MSMg01no400_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:54 2005
         (453 letters)



>mm_chrX_162619548_162620400
          Length = 853

 Score =  830 bits (429), Expect = 0.0
 Identities = 447/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttccattttaaaatgcctgtgccctcttaacagtagattaggctttattgatccc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttcatttccattttaaaatgcctgtgccctcttaacaatagattaggctttattgatccc 260

                                                                       
Query: 61  cagtagatgccaggaactgagcagcagactttggataaagtattgtttcctttagtatct 120
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cagtagatgccagggactgagcagcagactttgcataaagtattgtttcctttagtatct 320

                                                                       
Query: 121 gcttgtgattcttctctaaccacttgttctcttcggtttacctattttcttctgagtaaa 180
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gcttgtgattcttctctcaccacttgttctcttcggtttacctgttttcttctgagtaaa 380

                                                                       
Query: 181 ctgttgatttctttggcatgctcatattagaaagtatatccaggggctagagaaatagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttgatttctttggcatgctcatattagaaagtatatccaggggctagagaaatagct 440

                                                                       
Query: 241 cagtggttaggaatacttgctgctcttgcagaggacacaagctccattcccagcactcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtggttaggaatacttgctgctcttgcagaggacacaagctccattcccagcactcac 500

                                                                       
Query: 301 ccacctgtaacaataattccaagagatccagtgccctcttgggaccttcaggagcatgag 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ccacctgtaacaataattccaagagatccagtgccttcttgggaccttcaggagcatgag 560

                                                                       
Query: 361 gcataaacacgattcacaaacatacatgtagtgataaaaagaatgtatatccaaacaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcataaacacgattcacaaacatacatgtagtgataaaaagaatgtatatccaaacaact 620

                                            
Query: 421 atatgaaagcaatagtttctgatgtgcatagaa 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 atatgaaagcaatagtttctgatgtgcatagaa 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_i22.g1 MSMg01no400_i22.g1 CHROMAT_FILE:
MSMg01no400_i22.g1 PHD_FILE: MSMg01no400_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:54 2005
         (433 letters)



>mm_chrX_162794770_162795602
          Length = 833

 Score =  799 bits (413), Expect = 0.0
 Identities = 428/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacaaaagtcagaatgtatgtccatataaactgcttcaggatttctttaaaaatctaca 60
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 633 atacaaaagtcagaacgtatgtccatataaactgcttcaggatttcttaaaaaatctaca 574

                                                                       
Query: 61  atttcaaatcaagtacaaagactttctttcctccaggcaagaccctgatagctcctagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atttcaaatcaagtacaaagactttctttcctccaggcaagaccctgatagctcctagaa 514

                                                                       
Query: 121 ttttttccttataaaaccaccaacaatttggataccataggcagcctggatctctcatta 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttttttccttataaaaccaccagcaatttggataccataggcagcctggatctctcatta 454

                                                                       
Query: 181 tccctagaatttcaacccccctgaaaatgtaagttttaaattggggcagggagggcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tccctagaatttcaacccccctgaaaatgtaagttttaaattggggcagggagggcagag 394

                                                                       
Query: 241 tggactcaccttccttggtgctgaacttaaagtgaatggccaatgggccgggctttctca 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 393 tggactcaccttccttggtgctgaacttaaagtgattggccaatgggccgggctttctca 334

                                                                       
Query: 301 gaacagagctgggctcttaagaaaggtgagtgcacggcatgtggtgttggcgccctggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaacagagctgggctcttaagaaaggtgagtgcacggcatgtggtgttggcgccctggac 274

                                                                       
Query: 361 aagctgtatcaccttcaaaaactcatgttcctcagggctcccaaacaaaccgatgctagc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 aagctgtatcaccttcaaaaactcatgttcctcagggctcccaaacaaactgatgctagc 214

                        
Query: 421 aaagtctttgaag 433
           |||||||||||||
Sbjct: 213 aaagtctttgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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