BAC Information

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BAC

Clone NameMSMg01-400L19
ChromosomeX (Build37)
Map Location 98,119,759 - 98,120,096
singlet/doubletsinglet
Overlap geneTex11
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3
Downstream geneLOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400L19.T7 (MSMg01no400_l19.b1)MSMg01-400L19.TJ (MSMg01no400_l19.g1)
ACCAG500287AG500288
length783792
length of high quality
(start - end)
494 (73 - 566)426 (84 - 509)
definitionCHROMAT_FILE: MSMg01no400_l19.b1 PHD_FILE: MSMg01no400_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:08 2005CHROMAT_FILE: MSMg01no400_l19.g1 PHD_FILE: MSMg01no400_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATTAGTCCTCGTGTCGCTAAACGAANACTAAATCAACACAGGCGCGG
AATTCATTCTATTCCTAAAAGCATCATTTTTTACTTCTTTGAACATATTT
ATAGTCATTCTTTTCTGCGGGCCGGTAGTTTTGGAGACCACATGCCTTGG
TTTTTCATGTTGCTTGTGCTTTTGCTTTGGACCTTGTGCATCAACAATTA
GACCTTAGGTTGAATACAGCTGATCTTGCTCTATTTTGTTATTCATTTGT
GTGGAATGTCATTTTCTACCTCACCACATTCAAATCTTGTGTCCTTAAAA
GGCTGTCCTAAAAATGAATCTTTTATAGGTACAATATTTTCTTAGTTTTA
AACCATTATATACTCTGTGTCTTTTGATTACAGAATTAAGCTATTTTTAT
TCAAGGCAATTATTGATATACAAGGATTTATTATTGCCATTCAATTCATT
AGTTTGTTTTTATAGAACTTTTGTTCCTTTCTACCTATTGTCTACCTGTT
TCCACCTGTTTTATGTAATGAGGTGGTATTCTATACTTATCTGCTTTGAT
TACTGTATATGTTATGCAACAATTATAGTGTGTCTGTGGTTACCACAAAG
CTTATTTAAAACATTATATAAAGGTGCTTTTTTAAGCTGACAATTACTTT
TACTTGATTATTTCATAACAACCTCCATCTTTTATANCCCCCTGGCTTCT
TTTAAAACCTAATATCTTTCGAAACCCCTTAACATTTTTATATTTAAAGA
AATTCTTTATCAAACATTAATGGGGGGGTCATT
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGTCTACAGAGTG
AGGAAAAAATATGTTTTGAAAAAAAAACATTTTAAAAAATGTCATTTGTC
AATGTGTATGAGTATTTTGCCTCCATGCATGGTTGTGTACCATGTGTGTG
TGTAGTACCTGCAGAGGCCAGAAGAGGGAGCTGGATTCTCTAAATGGTAT
TAGAGACAATTGTAAGCTATTGTGTTGGTGCTAGGAATCTAACCCAAGTC
CTCTAAAAAAACAACCAGGCTTTTATATGTTGAACCATCTCTCTAGTCAT
TTTTTAAAACTTTACTTAAAATTTTGAGTTTTTCTTCATCTTTAAACCTT
GTTGTAAAGCATCCTTTGAGAATGTAACTTGGAAAACCACAAGATCATAT
ATATACATACATATATATATATATATATATATATATATATATATATATAT
ATATATATGCATTCACTCGTAAGACTTCTGTAGTGAGTTGGCTAGAAATG
TCCCCCATACGCTTATTTATATATTTGAACAATTGGGCCATAAAAGACCG
CCAATAAATTTTTATGGAAATAAAAAACGTTGATCTTTCTCGTATATTAA
TCGCCCCCGTCCAATAATATTTATCTTCTGTCTTAAAACATTCCTGTACC
CCCCTAAAAATAAATGGTTGTTTTTTTCTTCTTTATAATCTTCTCACTCC
TTCTTTACATTTCTTCTCTTAACTCTATACTTCTCACTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_l19.b1 MSMg01no400_l19.b1 CHROMAT_FILE:
MSMg01no400_l19.b1 PHD_FILE: MSMg01no400_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:08 2005
         (494 letters)



>mm_chrX_98119759_98120652
          Length = 894

 Score =  615 bits (318), Expect = e-180
 Identities = 333/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcattttttacttctttgaacatatttatagtcattcttttctgcgggccggtagtttt 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||
Sbjct: 338 atcattttttacttctttgaatatatttatagtcattcttttctgcggggtggtagtttt 279

                                                                       
Query: 61  ggagaccacatgccttggtttttcatgttgcttgtgcttttgctttggaccttgtgcatc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agagaccacatgccttggtttttcatgttgcttgtgcttttgctttggaccttgtgcatc 219

                                                                       
Query: 121 aacaattagaccttaggttgaatacagctgatcttgctctattttgttattcatttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 218 aacaattagaccttaggttgaatacagctgatcttgctctattttgtcattcatttgtgt 159

                                                                       
Query: 181 ggaatgtcattttctacctcaccacattcaaatcttgtgtccttaaaaggctgtcctaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ggaatgtcattttctacctcaccacattcaaatcttgtgtccttaaaaggctgtcctaaa 99

                                                                       
Query: 241 aatgaatcttttataggtacaatattttcttagttttaaaccattatatactctgtgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  aatgaatcttttataggtacaatattttcttagttttaaaccattatatactctgtgtct 39

                                                 
Query: 301 tttgattacagaattaagctatttttattcaaggcaat 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tttgattacagaattaagctatttttattcaaggcaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)