BAC Information

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BAC

Clone NameMSMg01-401E02
ChromosomeX (Build37)
Map Location 54,785,344 - 54,785,865
singlet/doubletsinglet
Overlap genenone
Upstream geneGm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101
Downstream geneAldoa-ps, EG666441, LOC666447, Zic3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401E02.T7 (MSMg01no401_e02.b1)MSMg01-401E02.TJ (MSMg01no401_e02.g1)
ACCAG500684AG500685
length741746
length of high quality
(start - end)
676 (51 - 726)526 (81 - 606)
definitionCHROMAT_FILE: MSMg01no401_e02.b1 PHD_FILE: MSMg01no401_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:50 2005CHROMAT_FILE: MSMg01no401_e02.g1 PHD_FILE: MSMg01no401_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTACCTCTGAGCCCTATATTTAACGGGATTATCTG
ATTTTCTGGAGTCCACCTTCTAGAGTTCTTTATGTATATTGGATATTATT
CCCCTATTTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
CCTTTTAATCATATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATT
TTATGAGGTCCCATTTGTCAATTCTCGATCATACAGCACAAGCCATTGCT
GTTCTATTCAGGAATTTTTCCCCTGTGCTCATATCTTCGAGGCTTTTCCC
CAATTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATAAATT
TGCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAATATCA
AGTGACCATAGGTATGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTATCTGACGCTATACCAGTACCATGCAGTTTTAATCACAAT
TGCTCTATAGTACAGCTTTGGGTCAGGCATGGTGATTCCACCAGAGGTTC
TTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGCTCTTTG
TTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCAAGGAAGACAAGAAA
TAGCTCACAAATGGTATCTTCTGACATCCACACCATCATGCTGTGAACAA
AAATGTAAACACACACACACAAATTTGTTTTAACAAAAACAGTCTTACTA
AATGACAAACTCCTAGAAGCACAGCTAATACCTCATCTACACTTGTCAAA
GAGAGGACAATTGCCATCATAATGTGATGTGCTGCACGAGGGACTCTCTT
CCATCCTTTGTCTGGATTCCTTATTCTGTTTTAGATGGCAACATTTCTCA
TTATTTAAACTCATTGACAACATGATATTAGCAGTGTCTCATAGGTCATT
CCTTCTTGCAGATGCATTAGGCACATAAGAAAGGAAGAGACCAGTTACAG
AGACAAAGTTTGGAGCTGAAACAAAAGGATGGACCATCTAGAGACTGCCA
TACCCGGGGATCCATCCCATAATCAGCCTCCAAACACTGACACCATTGCA
TACACTAACAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTTTTGTG
AGGCTATGCCGGCGCCTAACAAACACATAAATGGATGCTCACTGTCAGCT
ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAAAGAAAGTACCCAA
GGACCTAAAGAGATCTTGCAACCTATAGGTGGAACAACATTATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_e02.g1 MSMg01no401_e02.g1 CHROMAT_FILE:
MSMg01no401_e02.g1 PHD_FILE: MSMg01no401_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:50 2005
         (526 letters)



>mm_chrX_54785344_54786271
          Length = 928

 Score =  967 bits (500), Expect = 0.0
 Identities = 516/522 (98%), Gaps = 2/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcaaggaagacaagaaatagctcacaaatggtatcttctgacatccacaccatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acctcaaggaagacaagaaatagctcacaaatggtatcttctgacatccacaccatcatg 463

                                                                       
Query: 61  ctgtgaacaaaaatgtaa--acacacacacacaaatttgttttaacaaaaacagtcttac 118
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctgtgaacaaaaatgtaaacacacacacacacaaatttgttttaacaaaaacagtcttac 403

                                                                       
Query: 119 taaatgacaaactcctagaagcacagctaatacctcatctacacttgtcaaagagaggac 178
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taaatgacaaactcttagaagcacagctaatacctcatctacacttgtcaaagagaggac 343

                                                                       
Query: 179 aattgccatcataatgtgatgtgctgcacgagggactctcttccatcctttgtctggatt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aattgccatcataatgtgatgtgctgcacgagggactctcttccatcctttgtctggatt 283

                                                                       
Query: 239 ccttattctgttttagatggcaacatttctcattatttaaactcattgacaacatgatat 298
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cctgagtctgttttagatggcaacatttctcattatttaaactcattgacaacatgatat 223

                                                                       
Query: 299 tagcagtgtctcataggtcattccttcttgcagatgcattaggcacataagaaaggaaga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tagcagtgtctcataggtcattccttcttgcagatgcattaggcacataagaaaggaaga 163

                                                                       
Query: 359 gaccagttacagagacaaagtttggagctgaaacaaaaggatggaccatctagagactgc 418
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 162 gaccagttacagagacaaagtttagagctgaaacaaaaggatggaccatctagagactgc 103

                                                                       
Query: 419 catacccggggatccatcccataatcagcctccaaacactgacaccattgcatacactaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 catacccggggatccatcccataatcagcctccaaacactgacaccattgcatacactaa 43

                                                     
Query: 479 caagattttgctgaaaggaccctgatatagctgtcttttgtg 520
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  caagattttgctgaaaggaccctgatatagctgtcttttgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space:   473688
Effective search space used:   473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)