BAC Information

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BAC

Clone NameMSMg01-401O17
ChromosomeX (Build37)
Map Location 83,105,409 - 83,105,699
singlet/doubletsinglet
Overlap genenone
Upstream geneDmd, LOC100042296, LOC669833, 1600014K23Rik, Map3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562
Downstream gene5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027, Il1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401O17.T7 (MSMg01no401_o17.b1)MSMg01-401O17.TJ (MSMg01no401_o17.g1)
ACCAG501190AG501191
length757775
length of high quality
(start - end)
291 (328 - 618)256 (370 - 625)
definitionCHROMAT_FILE: MSMg01no401_o17.b1 PHD_FILE: MSMg01no401_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:39 2005CHROMAT_FILE: MSMg01no401_o17.g1 PHD_FILE: MSMg01no401_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCATCACCCCGCGGAAT
TCCACAGTCTACCAAAAGAATTTAGTGGCACCTGTCCATAGCCCCAGCCA
GCTCTGGTGAGGGACAGGATGAAGAATCCAAAGCTCAAGGTCATCATGGG
CTACAGGACAACTTAGAGGCTAGCCTGTCTTACTTGAAACTGTGTTCCAA
AAAAAAAAAAACAAAAAAAACAAAAGTTGAAAATAAAATCTATATGTATC
TTTTGAAAACATAGACTGTTGAGTTAAATAGTATAAAATAGGAAAGAACA
CAAAGTCAAAAATCTACTNGTTTAAGTTTAGCTTAGATTAACTTTCATTA
ACCTTTGCTGTATTAAAACGCAGAAATCCTTCAAATAGCACCTTTAATGA
ATTAATTTGTTTATTCTACTGTGTGCTTATAATCTCATGTGCCTGCGTGT
GGAGAGTATGAATGCCTGTATGCTTCAGCAGAAACTAGAAGACAACATCC
TCCTCCATCATCCTCCCCTTATTCCTTTGAGTCAGGGTCTCTCTCTGAAC
CTTGGGTTTTCACTTACTCCACTGTGCTTGAAGCAAGAAAGTCCCGGGCA
TCCTCCCATCTCCAGCTTTCAAAAATTAGAGCCACAGGCATTTTCCGAGA
CTCCTTTTTTTTTATTTCAGCCATGTTTGGACTGGGTTTCCAAATTCCAT
GCCTCAGGATTCCATAGCCCCTGCTTTTAAAACTTCTGCTATTCCTAGGC
CTTTGGA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGTATACCAGCTTTTGCTATGCA
AAACATGCTCGTTAATTTAATACTATTGGTTGAATAAAGATGCCTACAGC
CTGTAGTGGGGCAGAAGAGGGGTAGGTGGGGCTTTGGTTCCCAGGCTTGG
GGTCTGAGGCAGGGACCATGGAGAGAGGAGAAAGAAGAAGTCACCATGAA
GTATTTGGCTTATGAGCGCATGGCCATGAGGGCCAGCCTATTGGAGTATG
AGCAGCTTAGGTGCAACATTGAATGNGTTATCTCAGGGTTATTGACAGCA
AAGTAGATAAAATAGCATAGAGGATTGATATCAGCCCAGCTCTAGTGCTT
TATGGCTTATTATAAATATAAATGTTTTGTATCTTTTATTTGGGAGTTAA
ATAATCAAAGGTGGGGTAGAAATCCCCCAAATAATATTTACTGCAACATT
TTGGTGCTCAAGACAAATCTCAAATGGCCGAGACACAAAGAAATGTTCAA
CATTCTTGGTCATCAGAAAAATGCAAATTAAAGGGACTGAGATTCCCTTC
TTACAGCCACTAGAATGGCTAAGATCATAAACTCAAGTGACAGCACATGC
TTGGCGAGTTTTTGTATTATTAAGAAAACCCCCTCCTTTGCTGGTATTTT
CTTAGGTTCTTTTTCATGATAGCTACCTCTGTCAATTACCAATTATCTTT
GACTTTTATTTCAGTCCACCCTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_o17.b1 MSMg01no401_o17.b1 CHROMAT_FILE:
MSMg01no401_o17.b1 PHD_FILE: MSMg01no401_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:39 2005
         (291 letters)



>mm_chrX_83105330_83106020
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagcttagattaactttcattaacctttgctgtattaaaacgcagaaatccttcaaata 60
           |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 370 ttagcttagattaaatttcattaacctttgctgtattaaaaggtagaaatccttcaaata 311

                                                                       
Query: 61  gcacctttaatgaattaatttgtttattctactgtgtgcttataatctcatgtgcctgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcacctttaatgaattaatttgtttattctactgtgtgcttataatctcatgtgcctgcg 251

                                                                       
Query: 121 tgtggagagtatgaatgcctgtatgcttcagcagaaactagaagacaacatcctcctcca 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgtggagagtacgaatgcctgtatgcttcagcagaaactagaagacaacatcctcctcca 191

                                                                       
Query: 181 tcatcctccccttattcctttgagtcagggtctctctctgaaccttgggttttcacttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcatcctccccttattcctttgagtcagggtctctctctgaaccttgggttttcacttac 131

                                                              
Query: 241 tccactgtgcttgaagcaagaaagtcccgggcatcctcccatctccagctt 291
           ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 130 tccactgtgcttgaagcaagaaagtcccgggcatcctcctatctccagctt 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)