BAC Information

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BAC

Clone NameMSMg01-403E10
ChromosomeX (Build37)
Map Location 105,866,850 - 105,867,199
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx22, 2610002M06Rik, Gm732, Gm378, LOC668516, Gm379
Downstream geneBrwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403E10.T7 (MSMg01no403_e10.b1)MSMg01-403E10.TJ (MSMg01no403_e10.g1)
ACCAG502224AG502225
length798777
length of high quality
(start - end)
367 (44 - 410)443 (74 - 516)
definitionCHROMAT_FILE: MSMg01no403_e10.b1 PHD_FILE: MSMg01no403_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:30 2005CHROMAT_FILE: MSMg01no403_e10.g1 PHD_FILE: MSMg01no403_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTTTCCGGAGTAAAGAGGGAGAGAAACAAGATCCATTTCAACCTC
AGTTAGGCTGTGAGGGTGGGGGTTGTTGCTGCTACTGTTGTTAGAGTGGA
GAAAGCATTACCAGAAAAAATTCTATGTTTTAGCTCACCATTTCTCCAAC
CCCTTGGCATGAGCTTGAAGCTTATTTTACCTGCATTGGTTATCAGTTAT
GAGTTGCATATTTCTTATAGGCCCTGCTCAGCATGCATGTGAGAGGATAA
ATGAAAATCCAGGATTCTTACCATTATGTTATTTCAAAAGTCCATAGTCT
GCAAGTTTAAAAAAGTTTTACAGTGTTATGCATCTTTTACTCTTGGTGCT
TTTTGGAAATCTCTTGGGTGTCATCCTAAAAAGTAAATAACAGTAATTAA
TTCGAGCCATAGAATACATTTCCCAGTAACTTAAAAGCACTCTGGATGTG
CCCATCGTATTTCCATTATCTTACACCCCTCTTCTTTTTTGATAAATCGG
CTCCTTAATCTCTCGATTTTTTTTACCTTTACCTTTATTTTTTTCCCTTT
CCTTCCTATTACCTTTCCCCCCTTCTTTTTTATTCCCCCCCCACCTTTAT
CTATTTACCTCCTTCTCTCCCTAATTCACCCCTTTTTCCTTTTTTTTCTT
CCTTATTCCCCTCTTTTCCTCTCCTATTTCCTTTCACCCCTATTATTTCT
CCCGTCCCTCCCCTATTATCCTTTTTTCCACCTTCATCTCCCTTCTCT
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAAAG
CAATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATGGTGAGAAGCTG
GAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCC
CTACCTCTTCAACATAGTACTTGAAGTCCTAGCCAGAGCAATTCGACAAC
AAAAGGAGATCAAGGGGATACAATTTGGAAAAGATGAAGTCAAAACATCA
CGTTTTGCAGATGATTTTATAATATATATATATATATATATGACCCTAAA
AATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGCAGC
TGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGA
ATAAACAGGTTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTC
ACAAATAATATAAAATACCTTGGCGTGACTCTAACTAACGAAGTGAAAGA
TCTGTATGATAAGGATGTTACTTCCTTCCCCTCTCGCGTTTTGCTATTTT
TGACTAAATCCGGGACCCTCCTTTCGTATTATAAATCACCTAACCCCATG
TCCTTTTTTTATGGCCATTTTTCAGCACCACTTTACTCCGATCCAATTTC
TTTATCTTTCCCCCGTGGGTATTCCTTTCCCACTGTCCCGATCCCTTTAC
TACATATGCGGATGTATCTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_e10.b1 MSMg01no403_e10.b1 CHROMAT_FILE:
MSMg01no403_e10.b1 PHD_FILE: MSMg01no403_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:30 2005
         (367 letters)



>mm_chrX_105866632_105867399
          Length = 768

 Score =  630 bits (326), Expect = 0.0
 Identities = 344/350 (98%), Gaps = 1/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  ggagtaaagagggagagaaacaagatccatttcaacctcagttaggctgtgagggtgggg 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggagtaaagagggagagaaacaagatccatttcaacctcagttaggctgtgagggtgggg 278

                                                                       
Query: 79  gttgttgctgctactgttgtta-gagtggagaaagcattaccagaaaaaattctatgttt 137
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 279 gttgttgctgctactgttgttaagagtggagaaagcattaccagaaaaaattctatgttt 338

                                                                       
Query: 138 tagctcaccatttctccaaccccttggcatgagcttgaagcttattttacctgcattggt 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tagctcaccatttctccaaccccttggcatgagcttgaagcttattttacctgcattggt 398

                                                                       
Query: 198 tatcagttatgagttgcatatttcttataggccctgctcagcatgcatgtgagaggataa 257
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 399 tatcagttatgagttgcatgtttcttctaggccctgctcagcatgcatgtgagaggataa 458

                                                                       
Query: 258 atgaaaatccaggattcttaccattatgttatttcaaaagtccatagtctgcaagtttaa 317
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 459 atgaaaatccaggaatcttaccattatgttatttcaaaagtccatagtctgtaagtttaa 518

                                                             
Query: 318 aaaagttttacagtgttatgcatcttttactcttggtgctttttggaaat 367
           |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 aaaagttttacagtgttatgtatcttttactcttggtgctttttggaaat 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)