BAC Information

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BAC

Clone NameMSMg01-404E10
ChromosomeX (Build37)
Map Location 16,476,959 - 16,477,141
singlet/doubletsinglet
Overlap geneNdph
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob
Downstream geneLOC100043063, Efhc2, Fundc1, EG278181, EG668994, EG436196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404E10.T7 (MSMg01no404_e10.b1)MSMg01-404E10.TJ (MSMg01no404_e10.g1)
ACCAG502985AG502986
length774758
length of high quality
(start - end)
434 (37 - 470)184 (316 - 499)
definitionCHROMAT_FILE: MSMg01no404_e10.b1 PHD_FILE: MSMg01no404_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:53 2005CHROMAT_FILE: MSMg01no404_e10.g1 PHD_FILE: MSMg01no404_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
CTATCCCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAGCATT
CTTAATCACCAGGGAAATACAAATCAAAACAAAACTGAGATTCCATCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAG
GCTTGTACAACCACTCTGGAAATCACTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGTTATCTATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC
AACAGTGGAATATATACAGAATATGTGGTACATTTACTCAATGGAGTACT
ACTAAGCTATTAAAAAATGAATTTATCCACTCCAGCACCGGTGTGCCTTG
CCAGCAAAGTCTCCCGACACCCGCTAAGGCCCCCACGGGATTCCCCCCCG
GAACCTAAAACCTCCTGGTGAGTGTTATACAACGGCCCGTCTATTTCCAA
TCTCCGGGAACCTGATAACTGGCTTAACTTAGTAAAAAAAAAGACCTCCT
TCTTGGTATTCTCCCCCGGTTCCTTCCAACCCCTTTGTGGTGGAAAATAT
TTTTTTGTCTTAGTGACGGGTTTC
GATAGGCCTGGNGGCCGCCTGGTTTCCAAATTTAGGTGAACTATAGAAGT
TTCGCGGCAATCCAATGGGATCTAGTCAACGAGATGCCTTGGAGAATAAG
TCAGGCGCTTCTTCCCAAGACACTTAATTTATAAACTGTAAACAGCATGT
TGGATTGTATAAAGCACCCCTGAACTCATTGAATGGTTTAAGATTATTTC
TATCTAGCAGCATGGGAGTAGCAGCCAAGAAGCCAAGCCTGGTCTGACTG
ACCCTGAAGCAGTAGTACTTAGTGGAAAAGATGTAAGCCCACTTGGATCT
CCCAGGATTCTCTTTAAGGTCAGTAGAGAAGAATAGGACTCTTGCTCCTT
TCATCTCAGAGTGTCTGTTGCATAGTTAGAGGCAATGGCCACCACCACAG
TGCTACCTTAGGTGGATGAGGAAAATAGCTCCACCTTTAAATAAGGGTCC
CCTGCTCTGTGATAGGACACTGCATTCTTCCCCCTGTATGGCATCTGTGG
CAGAGCTTCACAGCAGCACGTAAGTATGTAAGGCGAGAAAGTTATGGAAT
AAGTAAGATAGGAAAGCAACACACGAGAAATAATTACCCCGCGTTATTTT
CACATATTCCCAGTTCCATTTAATAAGGGTCACTTAAATCAATGCCTGAC
CATCTCATCCAACATGTTTTCGCATAAACACGGACTCATTGTTTATAGTG
TTCTTTCCCCTCCTTCTATTTCTCCCCTTTTTTTATATTTTTTTTTTTTT
ATCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_e10.g1 MSMg01no404_e10.g1 CHROMAT_FILE:
MSMg01no404_e10.g1 PHD_FILE: MSMg01no404_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:53 2005
         (184 letters)



>mm_chrX_16476759_16477342
          Length = 584

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtcagtagagaagaataggactcttgctcctttcatctcagagtgtctgttgcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtcagtagagaagaataggactcttgctcctttcatctcagagtgtctgttgcatag 260

                                                                       
Query: 61  ttagaggcaatggccaccaccacagtgctaccttaggtggatgaggaaaatagctccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 261 ttagaggcaatggccaccaccacagtgctaccttaggtggatgaggaaaatagcttcgcc 320

                                                                       
Query: 121 tttaaataagggtcccctgctctgtgataggacactgcattcttccccctgtatggcatc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tttaaataagggtcccctgctctgtgataggacactgcattcttccccctgtattgcatc 380

              
Query: 181 tgt 183
           |||
Sbjct: 381 tgt 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)