BAC Information

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BAC

Clone NameMSMg01-404H19
ChromosomeX (Build37)
Map Location 17,829,489 - 17,829,955
singlet/doubletsinglet
Overlap geneUtx
Upstream geneEfhc2, Fundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951
Downstream geneLOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H19.T7 (MSMg01no404_h19.b1)MSMg01-404H19.TJ (MSMg01no404_h19.g1)
ACCAG503144AG503145
length767748
length of high quality
(start - end)		471 (37 - 507)524 (67 - 590)
definitionCHROMAT_FILE: MSMg01no404_h19.b1 PHD_FILE: MSMg01no404_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:10 2005CHROMAT_FILE: MSMg01no404_h19.g1 PHD_FILE: MSMg01no404_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCC
TGTTTCAGCTTCCTGAATGCCAGGTTAGGATGAGCTAAGATTTTTTGTTT
TAATGTTATCAGATTTCTAAAATAGGATTGAGTATTTTTGAAAATATCAG
CAGTTAAGCAAACCTAGGATTTAGAAGGGAAGAAAAATAAGAGAACTATT
CTTCACAATCATAACAAATGCTCTCACTTATTTAACAGTCAATTATACTT
TAGAACCTTAATAGGCATCTTAACAAATAATGTTTAAAGATACTGAATTC
CCAAAACACATCATCTCAAATAACAATTTTTTCCTCTATTTTATCAATCT
TTCTACTGAATGTTTCCCATTAGCTTATTTCTCATTTTAATTTAAAATAC
GAACAAAACCAAATTCTAAACTCTACTTCTCCTTTAGCTATACTATCCCT
TATCTGTACAACCTACATGACTGCAGATGACCCATGGGAACAGTCTATAC
TTGCTACCTCCAGNTTTATCTATCCTTTCATCTTGGGCTTNCACTTTGTA
AAACCCCAGTGAAACTAATTCTATTTCAAAGTTTCCCAAACATCCCTGAA
TACAGGCAAAAAGCAAAAATTTGGGACTCCGCTACCCTTTGGGGAAAAGG
AGGATTTAATTTTTTCCCTCCCTTTTAAACGGCGCACAAGAAAACCCCCC
CTTAGCCCTTTCACCTAAAAAAAAAGAGGGGAGGGCAAAAAAAGGACCCC
CTTGGTGGGGGGGGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTTGAGAGGATGTGGAGAAAGAGGATCACTCCTCC
ATTGTTGTTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAATTTGGATATAGTACTACCGGAGGATCCCGAAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACCGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCACAAACTGAAAA
GAACCCAGATGCCCCTCAACAGAGGAATGTATACAGAAAATGTGGTACAT
TTACACAATGAAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACC
TAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAGAATCTTAAGATACCCAAGATATAAGATACCATTTTGCTAACGCA
TGAAACTCCAGATGAAAGGAGACCACATTGGGGACACCTTGTCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h19.b1 MSMg01no404_h19.b1 CHROMAT_FILE:
MSMg01no404_h19.b1 PHD_FILE: MSMg01no404_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:10 2005
         (471 letters)



>mm_chrX_17829285_17830155
          Length = 871

 Score =  880 bits (455), Expect = 0.0
 Identities = 464/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctgtttcagcttcctgaatgccaggttaggatgagctaagattttttgttt 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattcttcctgcatcagcttcctgaatgccaggttaggatgagctaagattttttgttt 612

                                                                       
Query: 65  taatgttatcagatttctaaaataggattgagtatttttgaaaatatcagcagttaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taatgttatcagatttctaaaataggattgagtatttttgaaaatatcagcagttaagca 552

                                                                       
Query: 125 aacctaggatttagaagggaagaaaaataagagaactattcttcacaatcataacaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aacctaggatttagaagggaagaaaaataagagaactattcttcacaatcataacaaatg 492

                                                                       
Query: 185 ctctcacttatttaacagtcaattatactttagaaccttaataggcatcttaacaaataa 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctctcacttatataacagtcaattatactttagaaccttaataggcatcttaacaaataa 432

                                                                       
Query: 245 tgtttaaagatactgaattcccaaaacacatcatctcaaataacaattttttcctctatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgtttaaagatactgaattcccaaaacacatcatctcaaataacaattttttcctctatt 372

                                                                       
Query: 305 ttatcaatctttctactgaatgtttcccattagcttatttctcattttaatttaaaatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttatcaatctttctactgaatgtttcccattagcttatttctcattttaatttaaaatac 312

                                                                       
Query: 365 gaacaaaaccaaattctaaactctacttctcctttagctatactatcccttatctgtaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaacaaaaccaaattctaaactctacttctcctttagctatactatcccttatctgtaca 252

                                                          
Query: 425 acctacatgactgcagatgacccatgggaacagtctatacttgctac 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acctacatgactgcagatgacccatgggaacagtctatacttgctac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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