BAC Information

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BAC

Clone NameMSMg01-404P18
ChromosomeX (Build37)
Map Location 42,789,240 - 42,789,752
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038
Downstream geneEG385346, LOC100040075, Actrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P18.T7 (MSMg01no404_p18.b1)MSMg01-404P18.TJ (MSMg01no404_p18.g1)
ACCAG503522AG503523
length750737
length of high quality
(start - end)		513 (62 - 574)500 (67 - 566)
definitionCHROMAT_FILE: MSMg01no404_p18.b1 PHD_FILE: MSMg01no404_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:50 2005CHROMAT_FILE: MSMg01no404_p18.g1 PHD_FILE: MSMg01no404_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGA
TTCTTGTAAAATTATACCAATTAACAAAGCTGCTACTATCCAAGAAAGAA
TACTGAACTTTATGCATCATTAGACTAACTCAGAGAAGCAATTACAACTC
TCTTATGGAGTGTTAGTTTAGCTATAGAGTAAAGGTTGAATTGTTAATGA
GCAAAACTACTAAAAGACAAATAACATATTTTTAACTGTGTAAGATTTAT
TTGGAAACCTGTTTAAAAGTACTACATAGTTGCAATAATAGAATATTGAT
CTTTCCTGTGAATCTAAGATACTCAATAATGCCATTTAAACAGGAATTTT
AATTTCTTTTTAAATTTTAAAGAGAACTCTCTAATATATACCATCTGAAA
ATGAAGGAAAATTTCCACAGTATTTAATATTTATCAGAATGTATCAGTCA
AAGGTATTTGATTTTAAAACATCTATACTGTAGTCCATAAATATATGAAA
TTTAATAATAGGATTAAAAATTATTAAGGAAATGGAGGTACAATAATGAA
AGTGTACTCAGAAGAAATTAGCAGAGAGATGCTGAAATGGTTATTTTACC
AGCTCTAATAATTTAATTTGTGGAACATGAATGGCCCAAAGTAAACACCC
ACTCTCACTCTCCACCCCTTTTTTTCATATTCTCCGAGGTTGTTTACTAA
TGGTTTGTAAAGTTGTGGAAAATTTCACCCCCTTTCCTTCTTTTTAAAAA


GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTAGAGTTAACATTTTCTTTTACTGATGTATCA
ATTTCTTTATTCCATCTTCTACACCTGAGATTCTTTCTTCTATCTCCTGA
TTTCTGTTAGTGATATTTGCATCTGTTGTTCCTTTTCTCTTCCCTAGTTT
TTTTTTATCTCCAAGATTTGTGTTTTCTTTATTAATTCTATTTCTACTTT
CAGCTCTTGCACAGTTTTACTCATGCCCTTTACCTGTTTAATTTTATTTT
CCTGTAAATATTTAAGGCGTTCATTTATTTCCTCTTTAAAGACATCTACA
TGTTTGATCATATTTCCTGTATTTCTTTAAGGGATTTATTCATTTCCTCT
TTTAAGGACTTTATCATCCTTTAAGATTAGATTTAAAGTCAGTTTCCTGT
GTTTCTGTTGTGTTAGGATAGTCAGGGCTTGCTGTAGAAAGGTAGCTGTG
CTCCGATGTCATATTGCCCTGGCTTTTGTTGAATGGGCTCTTTCTAGGGC
CTTTATATAACTGGATAGCTTTGATACCTGGTTGTTCTTGAAGGACTAGG
TATTGGGAGGGAAATCACCCCTCCCCCTCTCATTAAATATTCCCCATACA
CTTTATATTTTATTTATTCAACTCTCTCCATACTCCCCCCTCATTCATAA
TCCCTCTATTTTTTACTACTAAAAACCTCGCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p18.b1 MSMg01no404_p18.b1 CHROMAT_FILE:
MSMg01no404_p18.b1 PHD_FILE: MSMg01no404_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:50 2005
         (513 letters)



>mm_chrX_42789040_42789952
          Length = 913

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataccaattaacaaagctgctactatccaagaaagaatactgaactttatgcatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttataccaattaacaaagctgctactatccaagaaagaatactgaactttatgcatcatt 654

                                                                       
Query: 61  agactaactcagagaagcaattacaactctcttatggagtgttagtttagctatagagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agactaactcagagaagcaattacaactctcttatggagtgttagtttagctatagagta 594

                                                                       
Query: 121 aaggttgaattgttaatgagcaaaactactaaaagacaaataacatatttttaactgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaggttgaattgttaatgagcaaaactactaaaagacaaataacatatttttaactgtgt 534

                                                                       
Query: 181 aagatttatttggaaacctgtttaaaagtactacatagttgcaataatagaatattgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aagatttatttggaaacctgtttaaaagtactacatagttgcaataatagaatattgatc 474

                                                                       
Query: 241 tttcctgtgaatctaagatactcaataatgccatttaaacaggaattttaatttcttttt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tttcgtgtgaatctaagatactcaataatgccatttaaacaggaattttaatttcttttt 414

                                                                       
Query: 301 aaattttaaagagaactctctaatatataccatctgaaaatgaaggaaaatttccacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaattttaaagagaactctctaatatataccatctgaaaatgaaggaaaatttccacagt 354

                                                                       
Query: 361 atttaatatttatcagaatgtatcagtcaaaggtatttgattttaaaacatctatactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atttaatatttatcagaatgtatcagtcaaaggtatttgattttaaaacatctatactgt 294

                                                                       
Query: 421 agtccataaatatatgaaatttaataataggattaaaaattattaaggaaatggaggtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 293 agtccataaatatatgaaatttaataataggattaaaaattattaaggaaatggaagtac 234

                                            
Query: 481 aataatgaaagtgtactcagaagaaattagcag 513
           |||||||||||| ||||||||||||||||||||
Sbjct: 233 aataatgaaagtatactcagaagaaattagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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