NTTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATC
CGCGGAATTCTGGAGCTGCCGTGAGTTTATCAGGAGACACAAGATGCAAA
ATTATTCAGAAAATGAAGTCAAGGTTTTACTAGATACTAGGGGAGAGTTT
TTTCTTTGAATTACATGCCAAGGTCAATGAGAAAGAATTCAGCCTAAGTT
CACCCAAAACCAAATCATACTTGAAATATAGTAGATGAGTCTACATACCA
TCTTAGAGTTTCTATTGTTGTGACAGAATACTATGACCATGGCAACTTGG
GGAGGAAAATGGTTCATTCATCTTATGCTTCACCTTTCCAGTTCATCATC
AAAGGAAGTCTAGACAGAATCTCAACCTGGGCAGGAACCTGCAGACAGAA
CTAATACAAAAGAAATTGAAGAATGCTGCTTACTGGCTTCTGTCTCATGG
TTTTCTCAGTCTTCTTTTTATGGAACTCATGATCATCAACACAAGGATGA
CAGCACCAAAATTATGTTGGACCCTCCTTAATTCATTACTAGTTAAAATG
ATCTACAGGCTTGCCTACAGCCAGATGGGCATGAGGCATTTTTTTTTTCT
CTGTTAAAGGCCCCTTTTCTCTGATAAATCTAGCTTGGTTCATGTGGACA
TAAAAACTAGGTAACATTCCCCTGCCTTTCTTTTCCTCCCCCTTTTTCTT
CCTCCCCAAAAAACCCTTTATCCCCTTAATCCTCCCTTTTGATTAAAGGT
CCATTGTGGAAAG

CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTAAACACATTAGAATT
CAAAGACAATTCATCACAAAAAATTATCTGGTTCAAAATAACAGAGCTGT
CTATGATGACAAAAGTGAACATGCTTGCCCTGAAGCAAAACTGCTGAATG
GCGGTAACAGTAAATCATGTCCACAAACATGGATAAATGAATATTTTGAA
ATATTGTTATAATAAGTGTAGTGAAATACTTTAATGGTTTACATTTTTGT
CTTTGATAAAATTTTACTCAGGAATATTTTTCATTCAGAGCAGTAAAGAG
TAATTTTACACATACTAAATTCTACTTGAGCTTAGTTATATGAAACAACT
GTCTTTTTATTATTATTATTCTTTCATTTGTCAGAAAAAGTATTTCCTCT
GGTATACTCTTCATATTATAGATTCCCAATTATGCTTTCATATTGCTGAC
ACAACCGTGCATCATTATAGAACATCACACAACTATGGGCAAACTATTTG
TTCATTAAATCCTAATTAAGAAAGTCCAAACCTTAAATGCATTTCCATAT
ATACTTATGAAAACATAATAATAATGCGAAGTTTCTAAAACATGCATTTG
CAAACGCTATGTAGTTTGTTTCGTTTGCCGGTTTAGCTGTAATACACCAT
GTTTTCTCCCTCCCACCCTTGAATTACAATGGTCGCTACTAAAACCN

Query= MSMg01no405_f12.b1 MSMg01no405_f12.b1 CHROMAT_FILE:
MSMg01no405_f12.b1 PHD_FILE: MSMg01no405_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:18 2005
         (489 letters)



>mm_chrX_43264616_43265504
          Length = 889

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctggagctgccgtgagtttatcaggagacacaagatgcaaaattattcagaaaat 66
           |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 207 gaattctggagcagctgtgagtttatcaggagacacaagaagcaaaattattcagaaaat 266

                                                                       
Query: 67  gaagtcaaggttttactagatactaggggagagttttttctttgaattacatgccaaggt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaagtcaaggttttactagatactaggggagagttttttctttgaattacatgccaaggt 326

                                                                       
Query: 127 caatgagaaagaattcagcctaagttcacccaaaaccaaatcatacttgaaatatagtag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caatgagaaagaattcagcctaagttcacccaaaaccaaatcatacttgaaatatagtag 386

                                                                       
Query: 187 atgagtctacataccatcttagagtttctattgttgtgacagaatactatgaccatggca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgagtctacataccatcttagagtttctattgttgtgacagaatactatgaccatggca 446

                                                                       
Query: 247 acttggggaggaaaatggttcattcatcttatgcttcacctttccagttcatcatcaaag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acttggggaggaaaatggttcattcatcttatgcttcacctttccagttcatcatcaaag 506

                                                                       
Query: 307 gaagtctagacagaatctcaacctgggcaggaacctgcagacagaactaatacaaaagaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaagtctagacagaatctcaacctgggcaggaacctgcagacagaactaatacaaaagaa 566

                                                                       
Query: 367 attgaagaatgctgcttactggcttctgtctcatggttttctcagtcttctttttatgga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attgaagaatgctgcttactggcttctgtctcatggttttctcagtcttctttttatgga 626

                                                                       
Query: 427 actcatgatcatcaacacaaggatgacagcaccaaaattatgttggaccctccttaattc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actcatgatcatcaacacaaggatgacagcaccaaaattatgttggaccctccttaattc 686

              
Query: 487 att 489
           |||
Sbjct: 687 att 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_f12.g1 MSMg01no405_f12.g1 CHROMAT_FILE:
MSMg01no405_f12.g1 PHD_FILE: MSMg01no405_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:18 2005
         (536 letters)



>mm_chrX_43408297_43409232
          Length = 936

 Score =  982 bits (508), Expect = 0.0
 Identities = 529/536 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctaaacacattagaattcaaagacaattcatcacaaaaaattatctggttcaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 736 agctaaacacattagaattcaaagacaattcatcacaaaaaattatctggttcaaaatat 677

                                                                       
Query: 61  cagagctgtctatgatgacaaaagtgaacatgcttgccctgaagcaaaactgctgaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cagagctgtctatgatgacaaaagtgaacatgcttgccctgaagcaaaactgctgaatgg 617

                                                                       
Query: 121 cggtaacagtaaatcatgtccacaaacatggataaatgaatattttgaaatattgttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cggtaacagtaaatcatgtccacaaacatggataaatgaatattttgaaatattgttata 557

                                                                       
Query: 181 ataagtgtagtgaaatactttaatggtttacatttttgtctttgataaaattttactcag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 556 ataagtgtagtgaaatactttaacggtttacatttttgtctttgataaaattttactcag 497

                                                                       
Query: 241 gaatatttttcattcagagcagtaaagagtaattttacacatactaaattctacttgagc 300
           |||||| |  |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 gaatatgtaacattcagagcagtaaagagtaattttccacatactaaattctacttgagc 437

                                                                       
Query: 301 ttagttatatgaaacaactgtctttttattattattattctttcatttgtcagaaaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttagttatatgaaacaactgtctttttattattattattctttcatttgtcagaaaaagt 377

                                                                       
Query: 361 atttcctctggtatactcttcatattatagattcccaattatgctttcatattgctgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atttcctctggtatactcttcatattatagattcccaattatgctttcatattgctgaca 317

                                                                       
Query: 421 caaccgtgcatcattatagaacatcacacaactatgggcaaactatttgttcattaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caaccgtgcatcattatagaacatcacacaactatgggcaaactatttgttcattaaatc 257

                                                                   
Query: 481 ctaattaagaaagtccaaaccttaaatgcatttccatatatacttatgaaaacata 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 256 ctaattaagaaagtccaaaccttaaatgcatttccatatatacttatgaaatcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)