BAC Information

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BAC

Clone NameMSMg01-405G06
ChromosomeX (Build37)
Map Location 13,638,616 - 13,639,046
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327
Downstream geneEG385328, LOC668991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405G06.T7 (MSMg01no405_g06.b1)MSMg01-405G06.TJ (MSMg01no405_g06.g1)
ACCAG503833AG503834
length798769
length of high quality
(start - end)
59 (111 - 169)451 (82 - 532)
definitionCHROMAT_FILE: MSMg01no405_g06.b1 PHD_FILE: MSMg01no405_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:21 2005CHROMAT_FILE: MSMg01no405_g06.g1 PHD_FILE: MSMg01no405_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAGTTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGGNA
CCGCGGAATTCTGTCAGTTCCCCACTGAGTGTGGTTTTGGCACCCTTGTC
CCAAAGTCATTGTATATATATATATATATATATATATATATATATATATA
TATATATATATATATATGCACGCAGAGAGGGGGGGGGGGGCGCCCCCCCC
CCACCCACACCCACACGGGCGGGCGCGCGCGCGCCCGCGCGCGCGCGGGG
GGGGGGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCCCCCGCCCGACAC
CCACAGNGACGCNCNCNGCGCGCCTGTTTCCCCCCCCCCCCCCGCGCCCC
GCCCCCCGCGCCCGCCCACCCCCCCCCCCCCCCCCCGCCCCGGGCGGCCG
CCCTCCCCCCGGCCCCCGCTCCCCCCCCCCCCCCGCCCCCCCCCCCCCCG
CCCCCCCCCCCGCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCACCCCCCCCCCCCCCCCCCGCGCCGCCCCCCCCCCCCGCG
CGCTCCCCCCCCCCCCTGGCCCGCCCTCCCCGGCCGCCCCCCCCCCGCGC
CGCCCCCCCCGCCCCCCCCCCCCCCCCCGCCCGCCCCGCCCCCGCGCGGG
TGCCGCCCCGCCTCCCGCCCGCCCCCCCCCCCCGCCCGCGCCCCCCCCCC
CTCCCCCCCCGGCCCCTCCCATGCGCGCGCCCCCCCCGGCCCCCCCCC
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACTCTTTTGTCCAACT
CCCTTAATTCTTTTCAGGTGAGATTGTTGACATGAAATGAAGATACATAT
GGGCTAAAAATAAATTTAAATTTGTAAATTTCTAAGTTCTATAAAATACA
ACAGACATCACAAAATATGTATTTGGTACATATGCTGAAACATTATTTAT
TACCTAAAATTCACATTTTAATTGACCATCCTAACTTTTATTTGCTGAAT
CCAATAAGTAGCCATTCAATGATATATGAACTTTTCCTATTTTGATATTT
TCCACAGGTTCTTTGGATTCCTAATCTGCTTCATGGGTGGATACATACAT
ATCTGGTAGTTCCTTTTCTTTGTTTGGTTTTGTGATGCTGGAGAGAAAAC
ACAGGGTCTTGTATATGCTACCCTCCTCCCCAGTTCAGCTTCTTCATATT
TCCCCCAGCAGTGAATCCATGTGTACACCCAGGGCACTCTCCCAGCCTGA
GACAAGGCCCCCTCCCTAACAAAGCCTCTCAGGTTATTGCAGCAACAAGC
TTGAGACCATTGACTACTCCACCAATACTATATTTTCCCCCATGGTTCAT
TTTGTGGGGGAGCCTGTCCCCCTTGGGAAATCTTTTTTTACAGGAATTGT
ACAATTGTTTACCCTCCCTCTTTGTGGCGTCTTCTACCTAATATTCCCCC
TATCTACTTGCGGTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_g06.g1 MSMg01no405_g06.g1 CHROMAT_FILE:
MSMg01no405_g06.g1 PHD_FILE: MSMg01no405_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:21 2005
         (451 letters)



>mm_chrX_13638196_13639046
          Length = 851

 Score =  810 bits (419), Expect = 0.0
 Identities = 428/431 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  ccttaattcttttcaggtgagattgttgacatgaaatgaagatacatatgggctaaaaat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ccttaattcttttcaggtgagattgttgacatgaaatgaagatacatatgggctaaaaat 792

                                                                       
Query: 81  aaatttaaatttgtaaatttctaagttctataaaatacaacagacatcacaaaatatgta 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaatttaaatttgtaaatttctaagttctataaaatacaacagacatcacaaaatatgta 732

                                                                       
Query: 141 tttggtacatatgctgaaacattatttattacctaaaattcacattttaattgaccatcc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttggtacatatgctgaaacattatttattacctaaaattcacattttaattgaccatcc 672

                                                                       
Query: 201 taacttttatttgctgaatccaataagtagccattcaatgatatatgaacttttcctatt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 taacttttatttgctgaatccaataagtagccattcaatgatatatgaacttttcctatt 612

                                                                       
Query: 261 ttgatattttccacaggttctttggattcctaatctgcttcatgggtggatacatacata 320
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttgatattttccacagattctttggattcctaatctgcttcatgggtggatacatacata 552

                                                                       
Query: 321 tctggtagttccttttctttgtttggttttgtgatgctggagagaaaacacagggtcttg 380
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 551 tctggtagttccttttctttgtctggttttgtgatgctggagagaaaacacagggtcttg 492

                                                                       
Query: 381 tatatgctaccctcctccccagttcagcttcttcatatttcccccagcagtgaatccatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatatgctaccctcctccccagttcagcttcttcatatttcccccagcagtgaatccatg 432

                      
Query: 441 tgtacacccag 451
           |||||| ||||
Sbjct: 431 tgtacatccag 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)