BAC Information

Click to search

BAC

Clone NameMSMg01-405H23
ChromosomeX (Build37)
Map Location 85,448,399 - 85,448,829
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405H23.T7 (MSMg01no405_h23.b1)MSMg01-405H23.TJ (MSMg01no405_h23.g1)
ACCAG503915AG503916
length823817
length of high quality
(start - end)
431 (74 - 504)398 (78 - 475)
definitionCHROMAT_FILE: MSMg01no405_h23.b1 PHD_FILE: MSMg01no405_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:30 2005CHROMAT_FILE: MSMg01no405_h23.g1 PHD_FILE: MSMg01no405_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATTCCTCCCCTCTGTCAGACTGAGAAGCACAAATGTATC
TTTAGACTATCTTCATTTCTGCAGGGTCAGATACTATGAATGCCATCTAA
AAGGCTAGAAAGGAGCTGTATATCACACATGTTTATCATTTTATTTTTTT
TCAGAGCATATATGTCCAATGAGATAAAATATCTAAGACTGGCTTTAAGT
TCAAAAGTGGCTTACAGATACAAGAATTACTCTTTTTCTTAACATAGAGA
ATAGGATCCTCAAAGAAATTTTTATCATAAAAATTTTAATAGGTAGGTGT
TGATATGGGTAAGGTACAATTGGGATTTATGCAAGTAAGATATTAAATGA
CAATAATTTCTGAGAAATATAACAGAATGTCTTTCTAAGTTATGTGTCAG
GACTGATCTAAGAGAGCTGGGAAATGATGAATAGCCTGAGGCATTTACTT
TTAAAAAAATTCTGAAAGCATTACACCGTAAAGAAACCTTGATATCCTGC
TATGGATTAGGTTACAAGAACTGACCTATCTATGTAATAATCCCCGGAGG
AAAGGGTATTACTTTGGGTAAAGGAAAGTATTCTCAAACCTTTTCCTACT
TAGCGGGCTTTTACTAATTTATTATACAAAGGAGGGTCATGGGAATATCT
TTTGAACCTTTTTATGTACTCCCCAAAACTCCTGGATTCTCTTTATTGGG
GGAATTATCCTTTTTTCATATTTTCCTGGGGGCAACAGGGCTCTCCCTTT
CCGTTCTTATGGACACCCGACCN
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAGTAATTCTAATAGGCCTGA
CTTTATATGTTACTTGACCTTTTTCCCTTACTGCTTTTAATATTCTATCT
TTATTTAGTGCATTTGTTTTCTGATTATTATGTGCCGGGAGGAATTTCTT
TTCTTGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTCATATTTTCATGGA
CATCTCTTTAGGTTTGGGAAGTTTCCTTCTCTAATTTTGTTGAAGATATT
TGCTGGCCCTTTAAGCTGAAAATCTTCATTCTCATGTACTCCTATTATCC
GTAGGCTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGAGTT
AGGATCTTTTTGCATTTTGCATTTTCTTTGATTGGTGTGTCCATGCTCTC
TATGGAATCTTCTGCACCCTGAGATTCTCTCTTCCATATCTTGTATTTTG
TTGCCAACGCTCGCATCTATGTTTTCTGATTTCTTTCCTAGGGGTTCTAT
CTTCCCAGTTGTCTCCCTTGGGCCGGCTGTTAGTTTGTTCGCTTCCATTT
TTCTTATTTTTTCCTTCGGCGGGTTCTTGTGCAATCCTCCTACATCGTGT
GCTCGTCGGATTTTTTGTTTATCCCTATTAACTTTGATAGACCTCAATCC
GCCGCTCTACGTTTTCTCTTTCTCTATCTTCTTCTTCTTCTCCCTTTTAC
TTCTCCCCGCTTCCTTTTTTTGCCCCCGGCACTAATTTTTTCTTTTTTCA
TTATTTTTTCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_h23.b1 MSMg01no405_h23.b1 CHROMAT_FILE:
MSMg01no405_h23.b1 PHD_FILE: MSMg01no405_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:30 2005
         (431 letters)



>mm_chrX_85448199_85449029
          Length = 831

 Score =  818 bits (423), Expect = 0.0
 Identities = 429/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcagactgagaagcacaaatgtatctttagactatcttcatttctgcagggtcagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcagactgagaagcacaaatgtatctttagactatcttcatttctgcagggtcagata 260

                                                                       
Query: 61  ctatgaatgccatctaaaaggctagaaaggagctgtatatcacacatgtttatcatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatgaatgccatctaaaaggctagaaaggagctgtatatcacacatgtttatcatttta 320

                                                                       
Query: 121 ttttttttcagagcatatatgtccaatgagataaaatatctaagactggctttaagttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttcagagcatatatgtccaatgagataaaatatctaagactggctttaagttca 380

                                                                       
Query: 181 aaagtggcttacagatacaagaattactctttttcttaacatagagaataggatcctcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtggcttacagatacaagaattactctttttcttaacatagagaataggatcctcaa 440

                                                                       
Query: 241 agaaatttttatcataaaaattttaataggtaggtgttgatatgggtaaggtacaattgg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 agaaatttttatcataaaaattttaataggtaggtgttgctatgggtaaggtacaattgg 500

                                                                       
Query: 301 gatttatgcaagtaagatattaaatgacaataatttctgagaaatataacagaatgtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttatgcaagtaagatattaaatgacaataatttctgagaaatataacagaatgtctt 560

                                                                       
Query: 361 tctaagttatgtgtcaggactgatctaagagagctgggaaatgatgaatagcctgaggca 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaagttatgtgttaggactgatctaagagagctgggaaatgatgaatagcctgaggca 620

                      
Query: 421 tttacttttaa 431
           |||||||||||
Sbjct: 621 tttacttttaa 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)