BAC Information

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BAC

Clone NameMSMg01-405N20
ChromosomeX (Build37)
Map Location 121,268,326 - 121,268,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405N20.T7 (MSMg01no405_n20.b1)MSMg01-405N20.TJ (MSMg01no405_n20.g1)
ACCAG504195AG504196
length815792
length of high quality
(start - end)
277 (47 - 323)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no405_n20.b1 PHD_FILE: MSMg01no405_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:59 2005CHROMAT_FILE: MSMg01no405_n20.g1 PHD_FILE: MSMg01no405_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTGTACTTTTTCCGCTAATATCCTCTTATTACAGTTCATTTTAC
TTTGAGATTTTATTTGTATAAAAATTGATAAAATGTTGAATAGATTCACA
AAAAGAAATCTTAGTAATTTACTGTTTATTTACTATGCCATGGACGTTTT
AATTATTATCATAGAGTATAAAATAAAATGTGAATGTGAGAAAGAAATTT
AGAGAACGAATTGGAAGGTGAGGATGGAAGGTGTCAAAATTTGGGTTTTG
TTGTTATGAAGAGACACTATGACCACTTTTATTCCTATAAAGCAAAAAAC
TTTGCTGGGGCTGACTTACAGTTTCAGAGGTTAATTTCATTATTGTCTTG
CCAAGAAGTATGGTAGTTTTCAGGAAGATCTTTTGTTAGAGCCGGAGATG
AAGCCAAGAGCTCCTAATCTTCATCCACAGGCAGCAAAAAGAGGCTGTCT
ACACACTGGTCAGACATGAGCATATATGATCTCTAAACCTGCCTCTAGTG
ACAGCCTTCCTTGATTGATCACCATATATAGCTTGTCCCTATAATTGGGG
TTTTCTGATCAGCCTGCCCGTTAAGCTTGTGTCTTGGGAAATTTATTCTC
CGCTTCCTTTTTTTCTTGCCCAGTTCTTTTCTCAATAGAAAAAATCCCCT
CCTTTTTTTCTTTTCCTCCCCTCCCCTCTGTAACTTTATATCCCCCTCGC
AACCCCTTTTCTACTCTCTTATATATACATCTTCTCTCTCCCCTCTCCTT
TCTTTGTCTATACCN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATGCTTTTCCACCCCCTCTC
TTTTTTTTTTTAACTCCAACTTATCTCAGGAGTTTATATTTAAAAGCTAT
TTGCTGTCAGAATATCCACTCTTCTCCTACAATCTGGGGTAACTTGTATT
CCTGGCTAATTCTGTATTAACTATGCTTATCTGAATTTCTAGTTGGTCTT
TTGCCATCTCTGAAAACATTGAATTTAAGTAACAGAACAATCATGCTAGG
CATGAAGAACTTGCTGCATGGTAAAATGGGTAGGAAATTATATGTATCGA
TTCAGATAATATACACCTTTTGAGAATTAGCTGTGCAATCTTAATGTCAG
AACAAAATAGCTTTCTGGATTTAAGTTACTGTACCTATGTTTCTTTCAGA
TAATCTATAAAGGCAAAATGAGTAGTGGTTTATAAATGGAGAAATGCTTG
ATTTAAGCATGGTGATATTGAAAAGAAATTTCAATTTTTCACTTTGAAAT
TAAATCTATGAAGGTGATTACTTGACTTATGTTTTGAAAAGTTTTTTGTT
GATTTTTTCTAATATTGGATATGCTTTTTTAACCTTTCCCTTATAAATAA
CAGGATTATAATGTTTTTCTCATAAAAGGACCTTTTATCTTTTGCCATCG
TTATAACGGGAATAAACCGAATAAGTTTGTATTCTCTCACCCCCCAACTA
ATATTCCCTCTTTAAAAGCCTTTATAAAAATTCCTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_n20.b1 MSMg01no405_n20.b1 CHROMAT_FILE:
MSMg01no405_n20.b1 PHD_FILE: MSMg01no405_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:59 2005
         (277 letters)



>mm_chrX_121268103_121268779
          Length = 677

 Score =  317 bits (164), Expect = 4e-91
 Identities = 256/306 (83%), Gaps = 37/306 (12%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctgtactt-tttccgctaatatcctcttattacagttcattttactttgagatt 63
           |||| ||||||||| |||  |||||||||||||||||| ||||||||||||||||| |||
Sbjct: 525 ggaaatctgtacttcttt-ggctaatatcctcttattatagttcattttactttgacatt 467

                                                                       
Query: 64  ttatttgt------------------------------ataaaaattgataaaatgttga 93
           ||||||||                              ||||||| ||||||||||||||
Sbjct: 466 ttatttgtattcgaaacaagaacagtgttacatttgtgataaaaa-tgataaaatgttga 408

                                                                       
Query: 94  atagattcacaaaaagaaatcttagtaatttactgtttatttacta-tgccatggacgtt 152
           ||| ||| |||||||||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct: 407 ataaattaacaaaaagaaatcttagtaatttactgtttatttactattacc-tggacctt 349

                                                                       
Query: 153 ttaattattatcatagagtataaaataaaatgtgaatgtgagaaagaaatttagagaacg 212
           ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 348 ttaatcattatcatagagtataaaataaaatgtgaatgtgagaaagaaatgtagagaaag 289

                                                                       
Query: 213 aattggaaggtgaggatggaaggtgtca-aaatttgggttttgttgttatgaagagacac 271
           ||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 288 aattggagggtaaggatggaaggtgt-agaaatttgggttttgttgttatgaagagacac 230

                 
Query: 272 tatgac 277
           ||||||
Sbjct: 229 tatgac 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)