BAC Information

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BAC

Clone NameMSMg01-406G02
ChromosomeX (Build37)
Map Location 117,913,340 - 117,913,479
singlet/doubletsinglet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406G02.T7 (MSMg01no406_g02.b1)MSMg01-406G02.TJ (MSMg01no406_g02.g1)
ACCAG504589AG504590
length774831
length of high quality
(start - end)
334 (69 - 402)141 (65 - 205)
definitionCHROMAT_FILE: MSMg01no406_g02.b1 PHD_FILE: MSMg01no406_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:40 2005CHROMAT_FILE: MSMg01no406_g02.g1 PHD_FILE: MSMg01no406_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCATAGTGCCTGTACCAGTTTATGTTTCAATCAATAGTGGTTTA
GTGTTCCTCTATCCATGTGATTGCCAGTACTTCTTGTTTTCATTCTGACT
GCAGTGAGGTGGAATCTCAAAATAGTTGTAAGCTACATTTCCCATTTGGC
TAACATTAGACATTGCTTTTAAAAACATTTCTTAGCTACTTTTATTTTGT
CTTCTTAGAAGTTTGTTCTGTTCCGTAGACAAAGTTTGTAATTGGATTGT
TGTTTTCATTTATATATTCTATATATCCAATATTTGGTTGATATATAGCT
GGAAAGCTTTTTAAAAAATTATATTTTCCCATATGAATAGTCTAACTTAG
ATGAGTACATACTTGATTATTATTTGTGCAATAACTATAAATAGCATCTG
CCATTTCATGGTCCTTTTTATATCAGGAAATATAATTGATTGGAGTGCAC
TGCTCTTATATCTTGAATACTGTTAATCTTTCCATTAGTGTATGATCTTC
TATTTTTACCTTTTATATACCTCTTTTGTGTTTCATATCCCATTATCATT
ATCATTACACATATTGTCTAATTTCCTAATTTTCGAAATTTTTTTCTCTT
TTATGTTTTTTTTTGCCTTTGTATTCCTTGTATTTTTTACATCCTTTCTC
GTTTGACCTTCTTGTATTCTCCCTTTTGATCCCATACCTTATAACTTATT
CCCCCTCTTCTTTGACATATATTG
CATGATAGGGGAGCCTGGCGGCGCCTGGATCATAATGGGGTGACCTATAG
AAGGTTCCCGGAATCTTTTACTTTACATTTTAATATCAGTAGATAAACCT
AACATATGGGAACGTGGCTATAGATTTTAGAAATAAATAAGAAGAATCAT
TTTCCACATGGTGAGACATGTTGGAAATATACTTCAGGGAACTGGCCTTC
TTACACCATATGTTGATAAATATTTTATATCAGCAAAGAACAAAGCATAA
AAGACAGTGCCGCATATATGTAGAGGAAATGACAAGTATAAGCTAGCTAT
TTCAAATTTTTTTTTTTACAAGTCTATATGCCCAGGACGAAGATGGCCCA
TAGAAGAACTTATTTTATCAGTCTGATAGATTATCTGAGTGCACTAGACT
ATGTTAAATAGGTTCCCTGATTATTCCTACATGTTTTTTTGCCCTCCAAT
TTCATTCTACCCCTTCCTCGTTTACCATGACTGACATTCCCGCTTTTTGC
CTCTTTCGCCCTCCCCCCCTTCTTTTTACTTTCTCTCCCTCTTCTTCCCT
CCCAAATCCATTAGCTTGTCACCTTATTTACCTCTCTCTCTTCGTTTACC
GTATCCTTTTTACTCTCCCGCCTTTTATTTCCTCATACCCTTCCCTCTTC
TTTATTCCTTTTTTCCTTTTCCCCTCCTCCTTCGCTTTTTGTTCCTTTAT
TCCCTTCCACTTTCTCCCGATTATCCTCACCGCCTACCCCCCGTCTTCTC
CCTTTTTCCACCCTTATCTCCCCCACCCACCCGCCTCCCTCTATTTCCCA
CTAATGTTATCGCATGTTCCCTCCTTTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_g02.g1 MSMg01no406_g02.g1 CHROMAT_FILE:
MSMg01no406_g02.g1 PHD_FILE: MSMg01no406_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:40 2005
         (141 letters)



>mm_chrX_117913140_117913681
          Length = 542

 Score =  255 bits (132), Expect = 6e-73
 Identities = 138/140 (98%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttactttacatttt-aatatcagtagataaacctaacatatgggaacgtggctatag 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cttttactttacattttaaatatcagtagataaacctaacatatgggaacgtggctatag 281

                                                                       
Query: 60  attttagaaataaataagaagaatcattttccacatggtgagacatgttggaaatatact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attttagaaataaataagaagaatcattttccacatggtgagacatgttggaaatatact 221

                               
Query: 120 tcagggaactggccttctta 139
           |||||||||||| |||||||
Sbjct: 220 tcagggaactggtcttctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 542
Length adjustment: 8
Effective length of query: 133
Effective length of database: 534
Effective search space:    71022
Effective search space used:    71022
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)