Query= MSMg01no409_i01.b1 MSMg01no409_i01.b1 CHROMAT_FILE:
MSMg01no409_i01.b1 PHD_FILE: MSMg01no409_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:53 2005
(457 letters)
>mm_chrX_17141124_17141983
Length = 860
Score = 804 bits (416), Expect = 0.0
Identities = 448/463 (96%), Gaps = 9/463 (1%)
Strand = Plus / Minus
Query: 1 ccatacatgtagcaccaacccttgtgcttatttaattcctatgagatatttatgatatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ccatacatgtagcaccaacccttgtgcttatttaattcctatgagatatttatgatatga 711
Query: 61 tagatatgcaaatatatataaatatatatacatgtttatagatgtatttaaagagattca 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 710 tagatatgcaaatatatataaatatatatacatatttatagatgtatttaaagagattca 651
Query: 121 gaggtggactgtgtttatatgaaattgaccctcctgaattcatttttgttatgtagtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaggtggactgtgtttatatgaaattgaccctcctgaattcatttttgttatgtagtaga 591
Query: 181 acactaa-atcagtggaaaccactttaactgcttgtctgtagcccatgaagataggaaga 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acactaacatcagtggaaaccactttaactgcttgtctgtagcccatgaagataggaaga 531
Query: 240 aattgtgtgctttgatgccttctctaatttgaattgaaaacaaaaggtttttaaaagctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aattgtgtgctttgatgccttctctaatttgaattgaaaacaaaaggtttttaaaagctc 471
Query: 300 ccacagaggcttgatatgttggggg-----ggggagctcaacgttttaaaggagaagggg 354
|||||||||||||||||||| | |||||||||||| |||||||||||||| ||
Sbjct: 470 ccacagaggcttgatatgtt---agcccaaggggagctcaaccttttaaaggagaagcgg 414
Query: 355 atgggaggggtaactaggaggggagcagtaagcaagatgtaaagtgaatttaaaaagaag 414
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 413 atgggaggggtaactaggaggggagcagtaagcgagatgtaaagtgaatttaaaaagaag 354
Query: 415 aataactgttttcttttttcttttttnaaagagtgactgggct 457
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 353 aataactgttttcttttttcttttttaaaagagtgactgggct 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 860
Length adjustment: 10
Effective length of query: 447
Effective length of database: 850
Effective search space: 379950
Effective search space used: 379950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_i01.g1 MSMg01no409_i01.g1 CHROMAT_FILE:
MSMg01no409_i01.g1 PHD_FILE: MSMg01no409_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:53 2005
(292 letters)
>mm_chrX_16952711_16953402
Length = 692
Score = 456 bits (236), Expect = e-133
Identities = 269/292 (92%), Gaps = 20/292 (6%)
Strand = Plus / Plus
Query: 1 tacaggctttgagacagaacagagacctcaaactccgggactcctatctcagactccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaggctttgagacagaacagagacctcaaactccgggactcctatctcagactccaga 260
Query: 61 atgctgagattgccaattatatgtcaccacatgggggcaagaaataaataaataaataaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 atgctgagattgccaattatatgtcaccacatgggggcaagaaataaa-aaa-------- 311
Query: 121 taaataaataaataaataaataaataaataaataaccgtattcaagcttctctccccatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 -----------ataaataaataaataaataaataaccgtattcaagcttctctccccatt 360
Query: 181 gtttgcagaaggttgctttctagtctgccattttactttgtttagtgtgtgtgaacacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtttgcagaaggttgctttctagtctgccattttactttgtttagtgtgtgtgaacacgc 420
Query: 241 atgtgtaacttgtttgatcaggaaggaggattgacattattcagagggcagc 292
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtgtaacttgggagatcaggaaggaggattgacattattcagagggcagc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
