BAC Information

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BAC

Clone NameMSMg01-411I19
ChromosomeX (Build37)
Map Location 53,387,475 - 53,387,894
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263
Downstream gene3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I19.T7 (MSMg01no411_i19.b1)MSMg01-411I19.TJ (MSMg01no411_i19.g1)
ACCAG508533AG508534
length761763
length of high quality
(start - end)
474 (68 - 541)428 (77 - 504)
definitionCHROMAT_FILE: MSMg01no411_i19.b1 PHD_FILE: MSMg01no411_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:38 2005CHROMAT_FILE: MSMg01no411_i19.g1 PHD_FILE: MSMg01no411_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCAATTGCCTTGCATGGTGATATTAAAGAGCCATATTTGTGGCCAA
ATTAAGATGTTGTTGAAGTCTGAAGTCTTGCTTCTCATGTCATATGTCTC
CGGATATCTTCATTCATTGAGGACCTATATGACACCTTTGTTCTGAAGTG
ATAATTCTGAGGGCAATTAAAGAATGTCTGAAAATTTTGGTTCTCATGAG
TCAATGCAGCCTTCAACACTGGTGAGTTTCTAACATATTTGATGTAGAAT
GGGTATGTCTGAACCTTTGTTAGGTTATTGAAGGAAGTTGTGAGGCACAT
ATATTCAATTTCATGTATATGTTTGTACTGTCACTGCCTTCAAACACACC
ATAAGGTGGCATCAGGTCCCATTTTAGATTGTTGTGAGCCACCATGTGTT
TTCTGGGTTTTCAACTCAGGACCTATGGAAAAGCATTCTGTGCTCTTAAC
TGCTGAGCCATTTTTGCAGCTCCAGCACATTGGTTCTAGACAGCTTAGTT
TAAGGCCACTTAAGGAATTGGGTAAAATCTGAGAATACCTATTTCAGCAT
GGGCAGATCAGAATACCCTTTGTTATACAGTATTTTGGATGATCTGTGGT
TTCTTAACTGTTAACCTTAAAATTTCTATACGAAAACATCTGGATTTGGT
TTACTGGCCTTAAGAAATTGTCCCTTCCATATCCTTGGAATATGGAAAGT
GCATTACCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAAAAACTTGTAATATTTAC
TTTAAACAATTCATACATTTACACCTCACAGCACTTCTTCATAACTGTAC
TACCATTGCTGAGATCCTTCTTCTTCCCAAATGGTCCTTCTATTATTTTT
ATAATGGTTCTCCTTTTCTTTGTGTGTATATCTGGGAACATCTCATGCAG
GTGGTTGTATTGTACTAGTTGCTATGTTTTTGTGATCACAAGGTCTAAAG
GACCACAATCTGGTCTTGATTTATCACATATAAGAGCATCTAACCCTGAA
TTACTCTTTTTCCTGAATCTACTTCTCCAGTCAAGGGATCACAAACACCA
CTTTTGAAGTACTCTATTGAAATGGGAAAAAATTGAAAATATTACACCGT
ATCTTCATCTGTTTCTACCTGAGGTGATATATTCTCATCTTTGTCAAATG
CTGGGCTCTGTACTATATGGACCACAGAAAATGGAAACCTAACATGCCAT
ATTATTCCAAGGGAATAAAATATTAATGATTTGAATTTCTCATGAAATAC
TGTCCAGGTGAATTTTTGAAACAGCCTTTATAAATGATCTAATTTACCAC
TTGATATCCTTTATATGCCTACATAATAAATAAGGGCTTCTAATTTATAT
GCTTACCGAATATTTTTACCAATTTTATACAAAAAAACCCCACACTTAAA
TATAGAACTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i19.g1 MSMg01no411_i19.g1 CHROMAT_FILE:
MSMg01no411_i19.g1 PHD_FILE: MSMg01no411_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:38 2005
         (428 letters)



>mm_chrX_53387475_53388302
          Length = 828

 Score =  273 bits (141), Expect = 2e-77
 Identities = 354/433 (81%), Gaps = 28/433 (6%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaaa-aaacttgtaatatttactttaaacaattcatacatttacacctcacagca-cttc 61
           |||| |||| |||| ||| |||||| ||||||||||||||||| ||| ||||| |  || 
Sbjct: 420 aaaataaacctgtattatgtacttttaacaattcatacatttataccccacagtagttta 361

                                                                       
Query: 62  ttcataactgtactacca---ttgctgagatccttcttcttcccaaatggtccttctatt 118
           |||||||||   || |||   ||||||||| ||||||| |||||| |||||||  || ||
Sbjct: 360 ttcataact---ctcccactcttgctgagacccttctttttcccagatggtccccctctt 304

                                                                       
Query: 119 atttttataatggttctccttttctttgtgtgtatatctgggaacatctcatgcaggtgg 178
           | |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 303 a-ttttatgatgtttctccttttctttgtgtgtatatctgggaagatctcatgcaggtgg 245

                                                                       
Query: 179 ttgtattgtactagttgctatgtttttgtgatcacaaggtctaaagg--accacaatctg 236
           |  ||||||  |||||||||||| ||||||||||||||||||  |||  ||||  | |||
Sbjct: 244 tcctattgttttagttgctatgtgtttgtgatcacaaggtctcgaggtcacca--agctg 187

                                                                       
Query: 237 gtcttgatttatcacatataagagca---tcta-accctgaattactctttttcctgaat 292
           | |||||  ||  | |||||  |||    |||  ||| |||||| ||  | | |||||||
Sbjct: 186 ggcttgaacta--a-atatat-agctgtgtctttaccttgaattgctgatctccctgaat 131

                                                                       
Query: 293 ctacttctccagtcaagggatcacaaacaccacttttgaagtactctattgaaatgggaa 352
           ||||||||||||| |||||||||||||||| ||||||||||||| |||||||| ||| ||
Sbjct: 130 ctacttctccagtgaagggatcacaaacactacttttgaagtacactattgaagtggcaa 71

                                                                       
Query: 353 aaaatt---gaaaatatta-caccgtatcttcatctgtttctacctgaggtgatatattc 408
           ||||     |||||||| | | || |||||||||||| |||||  ||||| || ||||||
Sbjct: 70  aaaa--aaagaaaatat-agccccatatcttcatctgcttctatgtgaggcgacatattc 14

                        
Query: 409 tcatctttgtcaa 421
           |||||||||||||
Sbjct: 13  tcatctttgtcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)