GAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATCTTTCCAAATTTTATCATGAAGGGATGTTGGATTTTG
TCAAATGCTTTCTCAGCATCTAATAAGATGATCATGTGATTTTTGTCTTT
GAGTTTGTTTATATAGTGGCTTACGTTGGTGGATTTACATATATTAAACC
ATCCCTACATTCCAGGGATGAAGCCTACTTGATCATGATTGATGGTTATT
ATGATTTGTTCTTGGATTTGTTTTGGAAGAATTTTATTGAGTATCTTTGC
ATCAATATTCATAAGGGAAATTGTTCTTAAGTTCTCTTTTTTGTTGGATC
TTTGTGTGGTTTAGGTATCAGAGTTATTTGGCTTCATAGAATGAATTGTT
TAGAGTACCTTCTGCTTCTATTTTCTATAATAGTTTAAGGAGAATTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGAACTCTACACTAAATCCATCTGGA
CCTGGGCTTTTTTTGTTGCTCAGAGATTATTAATGATTGCTTCTATTTCT
TTATGGGATATGGGACTGTTTAGACCATTACTCTGATCCTGACTTAACCT
TCGTACCTGATATCTGCCTAGCAAATTTGTCCATTTCCTCCACGTTTTCC
TGATTTGCTGCGTTTAGCCTCTTGTCCTTTTGATCTCTTGTCCTTCCTTG
TCCCTCTCATCTACCTCTTTTCCCCGCTCCATTTCCCTTTCCTTTCTTTC
CCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTAATTCTATGTGGTATGTC
TTATTAAGAAATGTAATGTTTGGGTTTTTCAATGAATTAACTGATGTATT
TAAATATTAATCAATAATCTGAATAATATAAGTAATATTCCTGCATGTTA
TTATTCTTTAGAAAGCAAAGTTGACATTTTAATATGTCATTGCAATTAAA
TCTTTGAGGATTGGTCTTAGACTCTGGGAAAATGGTCAGTCTTTTAAACT
ACTATCTAGAAAGAAGTATTCTTTCACATTTTCATTAAGACTATATAATG
TACCACTATAATTATAATGAAGTTCATAGCTACTGAAGATATTAGGATAA
AATAATAATAATGAACTTTACAATAATTTATTCCTGGGCCATTATGGTCC
TACATACTTACAGAAGTTTTTTGTTTCCTTGTTTGTTTTTCACATTCTCA
CCTAGTTCATAAATAAGGGACATGAATGGAAATCTTTTGAATGTCTAGGA
TTTCCCTTAAATTGTATAAATCAAGCTGCATAACCTTTTCTTCATTCCTC
CTTGAAAATAATTCTTCATAGTGACAAAATGTTACTTTATTGCCGTCCTC
TTACTTAACATTTCTACTAACTGTACCCCCTTATTTTTTTTATTTGGCTC
CCAATGTCTATTCTATAATTATTCATACAACACTCGTGTTTAATTTTT

Query= MSMg01no411_k06.g1 MSMg01no411_k06.g1 CHROMAT_FILE:
MSMg01no411_k06.g1 PHD_FILE: MSMg01no411_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:45 2005
         (440 letters)



>mm_chrX_81872695_81873534
          Length = 840

 Score =  820 bits (424), Expect = 0.0
 Identities = 436/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctaattctatgtggtatgtcttattaagaaatgtaatgtttgggtttttcaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tctcctaattctatgtggtatgtcttattaagaaatgtaatgtttgggtttttcaatgaa 581

                                                                       
Query: 61  ttaactgatgtatttaaatattaatcaataatctgaataatataagtaatattcctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttaactgatgtatttaaatattaatcaataatctgaataatataagtaatattcctgcat 521

                                                                       
Query: 121 gttattattctttagaaagcaaagttgacattttaatatgtcattgcaattaaatctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gttattattctttagaaagcaaagttgacattttaatatgtcattgcaattaaatctttg 461

                                                                       
Query: 181 aggattggtcttagactctgggaaaatggtcagtcttttaaactactatctagaaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggattggtcttagactctgggaaaatggtcagtcttttaaactactatctagaaagaag 401

                                                                       
Query: 241 tattctttcacattttcattaagactatataatgtaccactataattataatgaagttca 300
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tattcacccacattttcattaagactatataatgtaccactataattataatgaagttca 341

                                                                       
Query: 301 tagctactgaagatattaggataaaataataataatgaactttacaataatttattcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagctactgaagatattaggataaaataataataatgaactttacaataatttattcctg 281

                                                                       
Query: 361 ggccattatggtcctacatacttacagaagttttttgtttccttgtttgtttttcacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggccattatggtcctacatacttacagaagttttttgtttccttgtttgtttttcacatt 221

                               
Query: 421 ctcacctagttcataaataa 440
           || |||||||||||||||||
Sbjct: 220 ctgacctagttcataaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)