Query= MSMg01no411_o17.b1 MSMg01no411_o17.b1 CHROMAT_FILE:
MSMg01no411_o17.b1 PHD_FILE: MSMg01no411_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:07 2005
(573 letters)
>mm_chrX_11017292_11018264
Length = 973
Score = 793 bits (410), Expect = 0.0
Identities = 440/456 (96%), Gaps = 11/456 (2%)
Strand = Plus / Minus
Query: 1 tacctgctggcctgaatgaccaaacagtttgcatttccagactggagaagctggcattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tacctgctggcctgaatgaccaaacagtttgcatttccagactggagaagctggcattag 392
Query: 61 gactacccttgggatgcagcaaattgtccctgggcccacactttggtgcctgcttaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gactacccttgggatgcagcaaattgtccctgggcccacactttggtgcctgcttaattt 332
Query: 121 ggcagaacactgtagccagaatgttctgcattgaaaacaatcccacagagttacagactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggcagaacactgtagccagaatgttctgcattgaaaacaatcccacagagttacagactt 272
Query: 181 agactccactaaggaaacctgtctcccttctctaacactacaatataccatggtttacat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 271 agactccactaaggaaacctgtcttccttctctaacactacaatataccatggtttacat 212
Query: 241 agtttaaacc------atttttcagactcatttgtattgttattcccattctgtggatga 294
|||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct: 211 agtttaaaccaacacaa-----cagactcatttgtatcattattcccattctgtggatga 157
Query: 295 ggatgctgaggcccacggaggtgcctaataagtgatgataagattgagttacacagctgt 354
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ggatgctgaggcccacagaggtgcctaataagtgatgataagattgagttacacagctgc 97
Query: 355 gcttcttggcctggggtgaatagtttgtcctgtccacatcatgaggaatcagcctggtcc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gcttcttggcctggggtgaatagtttgtcctgtccacatcatgaggaatcagcctggtcc 37
Query: 415 atttcccagtcagacactggccattttccttgtgcc 450
||||||||||||||||||||||||||||||||||||
Sbjct: 36 atttcccagtcagacactggccattttccttgtgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_o17.g1 MSMg01no411_o17.g1 CHROMAT_FILE:
MSMg01no411_o17.g1 PHD_FILE: MSMg01no411_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:07 2005
(592 letters)
>mm_chrX_10843463_10844453
Length = 991
Score = 1073 bits (555), Expect = 0.0
Identities = 582/597 (97%), Gaps = 11/597 (1%)
Strand = Plus / Plus
Query: 1 agagcaggactcacctgaattttcatcccagtggccacatgtgttgagcttgtgcaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcaggactcacctgaattttcatcccagtggccacatgtgttgagcttgtgcaaagc 260
Query: 61 agcttccctctgtggggagggtcagcagatgccaagagctgcatctttgtcagtgactag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttccctctgtggggagggtcagcagatgccaagagctgcatctttgtcagtgactag 320
Query: 121 tatttgccccttccttccagtcagagacattgtataaagcgagaacaggctgatttcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttgccccttccttccagtcagagacattgtataaagcgagaacaggctgatttcttg 380
Query: 181 cttgctgtcatcaactagcagcttttctacttggttgccagctcattatttgtccttaca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgctgtcatccactagcagcttttctacttggttgccagctcattatttgtccttaca 440
Query: 241 gacaggtttttt-----ccaggggaacttgtgacctggggaattccttctcttataggtg 295
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagg------gggcaccaggggaacttgtgacctggggaattccttctcttataggta 494
Query: 296 aggagactatggccgattgcatccaggtaacagatccttcatcccactttacagtgaagg 355
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggagactatggccaattgcatccaggtaacagatccttcatcccactttacagtgaagg 554
Query: 356 caccatgccatagaaggagtatattcccctgcctttcaggtaaagcaaggcatggaactt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caccatgccatagaaggagtatattcccctgcctttcaggtaaagcaaggcatggaactt 614
Query: 416 tcttctgctgatggcagggccttgcctccttcatggtgcctctgatatcatataagacag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcttctgctgatggcagggccttgcctccttcatggtgcctctgatatcatataagacag 674
Query: 476 ttgtctcccaccattggagctgatatgacagaatacttgagactgagtcttgtagaaaaa 535
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgtctcccaccattagagctgatatgacagaatacttgagactgagtcttgtagaaaaa 734
Query: 536 ctggaaactagttctcttagagctctgaaaactgagaattccaaaatggaagttcta 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctggaaactagttctcttagagctctgaaaactgagaattccaaaatggaagttcta 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space: 570942
Effective search space used: 570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
