BAC Information

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BAC

Clone NameMSMg01-412C01
ChromosomeX (Build37)
Map Location 152,543,142 - 152,660,357
singlet/doubletdoublet
Overlap genenone
Upstream gene1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
Downstream gene4930503H13Rik, LOC640803, LOC434885, Phex
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412C01.T7 (MSMg01no412_c01.b1)MSMg01-412C01.TJ (MSMg01no412_c01.g1)
ACCAG508975AG508976
length763793
length of high quality
(start - end)		499 (48 - 546)347 (79 - 425)
definitionCHROMAT_FILE: MSMg01no412_c01.b1 PHD_FILE: MSMg01no412_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:23 2005CHROMAT_FILE: MSMg01no412_c01.g1 PHD_FILE: MSMg01no412_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,659,867 - 152,660,357)(152,543,142 - 152,543,488)
sequence
GGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCGGATGTCTCCTGGGGTGCTGCAGTTCCTGAGTCATCCTGGTA
GACAGTGAGAGAGGCTTCCATACTGCCCTGATAGAACAAGTGCCCATGTC
CATTGGCCTACCATGTGACACAAAATATAGGCTCTTAAGAAACTAGTGGA
ATCTCAGAATGAGCCTAGAATAGGGCAGTGGCTCCTTCCTCCATCTTTAC
AGAAGTTCCCTCATATACTGGCAGTGCTGAACCTTCCTGTAGTACCAGCA
GGGTGGTTTACTACTTCAGAGCTTGGACCAAAGGCTGTATAAAAAATCAC
TTGGTGCTGTGCAATACGGTAGGTCTGCACCTCGATGCTGGTCTTAGAAG
TCTGTTTGCCAGGTTTACGATTGCCTCTCTCACTCTTTCCGGGATCCCAG
TTCGCACACTTTTCTTTTCATCATCCAAGGGGAATTCCCAAGAAAAACTA
GGAAAGGGGATAACATTTGAAATGTAAATAAAGACAATATCTTAAGAAAA
AAAAAAGAATATTACTTCTGAACAGAATGAATGTGTTTCGAAATCTCATA
CCCCATTTGAAAGGGGCGGAATCTATTCCTATAGAACCCGATCTTGCTAT
CTAATCAAGTATTCCTCTCCTGTTCCTGAACCATTCGAACCATCTATCAT
TCCGACCCCTAAGAATTCCCCTATAATGATACTACCTACCCATTTAAGTT
CCGGACCCTAGGT

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGAGCACTTATTTGAAAGCT
CTAAACTATAAACTGTAGCAAGGAGAAGAAGTCCAGAATTAAAAGTACGA
CTGGATTCATGGTGTATTTATCTGTGTTTTCCTTCAGCATTGTCCTGTAT
GACAATAATATAACCAAAAACACAAGCATGCTTGGGGTGAAGTGAGGGGA
TTGCTGGAAAATGTTTTCTCTCTATCTTTGGAAGGAGAGAAACAGTCTCC
TAGACTTACATTTTAACTCCTCTGGGTACCTCCCAGCTGAAGTACTCATG
GCAGCAGGAAAGACAGATGTAACAGTGATATTAAGCCACTATCAGCCTAT
GTCACACTTTCTCTGTGATGGAGAGTCTTAGATTCCAAGAGGTTAAACTG
AATTCCCATCGAAGTTTGTCTTTCTTCTTTTTTGCTTGGCCCTAAACACC
CCATCATCGCCCTGTACCATACATTCTGCTCCGCCCACCCATGTTTCTTT
TGATTCCCTCGCCCTGCTCTTTTGCTCCTTCTTCCTTTACCTTCCCCTTC
CTTCTTTTCGCTTTTTTTTTTATTATTTTTCCCCCTCCATCCATCCTTTC
CCCCTTCTCTTTCCCTTATTTCCTCCTCTTATTCTCCTCTTCTTATTTCT
CCCTCCCTTCTTCTCCTTTTCTTTCCCTCTTCCTCTGCATAACCAGTTCC
TTTCCTTCTACTCTCTTACTCCTCTCCCCTTTTCCCCTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_c01.b1 MSMg01no412_c01.b1 CHROMAT_FILE:
MSMg01no412_c01.b1 PHD_FILE: MSMg01no412_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:23 2005
         (499 letters)



>mm_chrX_152659728_152660626
          Length = 899

 Score =  895 bits (463), Expect = 0.0
 Identities = 484/491 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccggatgtctcctggggtgctgcagttcctgagtcatcctggtagacagtgagag 64
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattcctgatgtctcccggggtgctgcagttcctgagtcatcctggtagacagtgagag 571

                                                                       
Query: 65  aggcttccatactgccctgatagaacaagtgcccatgtccattggcctaccatgtgacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aggcttccatactgccctgatagaacaagtgcccatgtccattggcctaccatgtgacac 511

                                                                       
Query: 125 aaaatataggctcttaagaaactagtggaatctcagaatgagcctagaatagggcagtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaaatataggctcttaagaaactagtggaatctcagaatgagcctagaatagggcagtgg 451

                                                                       
Query: 185 ctccttcctccatctttacagaagttccctcatatactggcagtgctgaaccttcctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctccttcctccatctttacagaagttccctcatatactggcagtgctgaaccttcctgta 391

                                                                       
Query: 245 gtaccagcagggtggtttactacttcagagcttggaccaaaggctgtataaaaaatcact 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtaccagcagggtagtttactacttcagagcttggaccaaaggctgtataaaaaatcact 331

                                                                       
Query: 305 tggtgctgtgcaatacggtaggtctgcacctcgatgctggtcttagaagtctgtttgcca 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 tggtgctgtgcaatacggtaggtctgcacctcaatgctggtcttagaagtctgtttgcca 271

                                                                       
Query: 365 ggtttacgattgcctctctcactctttccgggatcccagttcgcacacttttcttttcat 424
           |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 270 ggtttatgattgcctctctcactctttccgggatcccagttcccatacttttcttttcat 211

                                                                       
Query: 425 catccaaggggaattcccaagaaaaactaggaaaggggataacatttgaaatgtaaataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 catccaaggggaattcccaagaaaaactaggaaaggggataacatttgaaatgtaaataa 151

                      
Query: 485 agacaatatct 495
           |||||||||||
Sbjct: 150 agacaatatct 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_c01.g1 MSMg01no412_c01.g1 CHROMAT_FILE:
MSMg01no412_c01.g1 PHD_FILE: MSMg01no412_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:24 2005
         (347 letters)



>mm_chrX_152542942_152543688
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagcacttatttgaaagctctaaactataaactgtagcaaggagaagaagtccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagagcacttatttgaaagctctaaactataaactgtagcaaggagaagaagtccagaa 260

                                                                       
Query: 61  ttaaaagtacgactggattcatggtgtatttatctgtgttttccttcagcattgtcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaagtacgactggattcatggtgtatttatctgtgttttccttcagcattgtcctgt 320

                                                                       
Query: 121 atgacaataatataaccaaaaacacaagcatgcttggggtgaagtgaggggattgctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacaataatataaccaaaaacacaagcatgcttggggtgaagtgaggggattgctgga 380

                                                                       
Query: 181 aaatgttttctctctatctttggaaggagagaaacagtctcctagacttacattttaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgttttctctctatctttggaaggagagaaacagtctcctagacttacattttaact 440

                                                                       
Query: 241 cctctgggtacctcccagctgaagtactcatggcagcaggaaagacagatgtaacagtga 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cctctgggtacctcccagctgaagtactcatggcatcaggaaagacagatgtaacagtga 500

                                                          
Query: 301 tattaagccactatcagcctatgtcacactttctctgtgatggagag 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattaagccactatcagcctatgtcacactttctctgtgatggagag 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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