BAC Information

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BAC

Clone NameMSMg01-412H02
ChromosomeX (Build37)
Map Location 84,896,207 - 85,004,926
singlet/doubletdoublet
Overlap geneLOC667876
Upstream geneIl1rapl1
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412H02.T7 (MSMg01no412_h02.b1)MSMg01-412H02.TJ (MSMg01no412_h02.g1)
ACCAG509215AG509216
length757755
length of high quality
(start - end)		571 (50 - 620)474 (78 - 551)
definitionCHROMAT_FILE: MSMg01no412_h02.b1 PHD_FILE: MSMg01no412_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:48 2005CHROMAT_FILE: MSMg01no412_h02.g1 PHD_FILE: MSMg01no412_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,004,360 - 85,004,926)(84,896,207 - 84,896,680)
sequence
NCCCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGACCATAATACTTGATTTACTAATGTCTTGCAGCCAAAT
ACTATGTACCAGAATACAAGGCTAGATGTTAAAGATCAATAGGCCAAGAT
CAAATTATTTTGCCTGTACCTAAAATAACGCCTCCGCAGCTTTCCAAATT
ACTAAATACCAATTGTTCTGTAGTAGTTATGATAAATCAAGAACAATCAC
TACTCTGTAGGTTACTTATCATATAGAATCATTCCCTCTGTGTACTTGTG
GATGAGAAATCCCCAAATCTGATTATGACTTTGTAAGTTGCTACCTTAAC
AAAGTAATACATTCTAGCTCTCTACATGTTAAATGCTAACACATAGGCAT
TGGGATGCTACTCTACAGTTGGAGAAACGTAGAAGATGAAGGAAGAGAAG
CAGGAGGAAGATGAGAAGGAGAAGAACAGAGTATGAAAAAGTTCCCTTTC
TGATAGTGAGACTTTGAGTAGAGTGTATTAAATTACAGATGACAATGAAA
CATTTCTGGTTTTCTAAGACCAAAGCATAACATAAAATGATTTAGTAACA
AGACTGATTCAAGAAATTAAATAATATTAGACCTNGAAAAAGACACCAAA
ATTTATCTGGCATAGCACCCCCCAAAAAAAGCATTCTAATTAGATGAACA
TTTTCCCTTCCCAATTTACATATTGGNGCTGCAATGAAATTGTTTTATTG
TCTTTCC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCATTTAGGGTTCCAGAACATC
TTCTCTGAGAATTGGAGAAAGTTTAGACTGAATAAAATTTGAAAGTTCTT
GACTCCTTAAGCTTTATGAAATTGTAACTATGCACCTAGCAACATCAACG
TGGATAACACCCTAAAAACTTGACAAAATAATGAAAAAAATTAATAAATA
CAGTTATAAACAAATAATCTAATTAATACATTAAACATTGACACATGGCA
TAAATAATATGGTTAAGAGTCATTCGTATAATTGTGAGTGAGGTAACCCA
ATCACAAAAGTACACACATGATATGGACTCACTGATAAGTGGATATTAGC
CCAGAAACTTAGAATACCTAAGATATAATTTGCAAAACACATGACACTCA
AGAAGAAGGAAGACCAAGGTGTGCATATTTCATTCCTTCTTAGAATGGGG
AACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGAC
AGAAGGAAGGACCATTCAGAGACTGCCCCACTTGGGGATCCACCCCATAA
ACAACCACCAAACCCAGACACAATTGCATATGCCAGCAAGAATTTGCTGA
TAAGATGCTGATATAACTGTTTCCTGTGAGGGTATGCCAGTGCCTGGCAA
ATACAAAACGGTAGGCCCCTAGCCCTCTTATTGATCGGACCCAATGACCC
CACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_h02.b1 MSMg01no412_h02.b1 CHROMAT_FILE:
MSMg01no412_h02.b1 PHD_FILE: MSMg01no412_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:48 2005
         (571 letters)



>mm_chrX_85004346_85005316
          Length = 971

 Score = 1081 bits (559), Expect = 0.0
 Identities = 565/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaccataatacttgatttactaatgtcttgcagccaaatactatgtaccaga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaattcatgaccacaatacttgatttactaatgtcttgcagccaaatactatgtaccaga 522

                                                                       
Query: 65  atacaaggctagatgttaaagatcaataggccaagatcaaattattttgcctgtacctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atacaaggctagatgttaaagatcaataggccaagatcaaattattttgcctgtacctaa 462

                                                                       
Query: 125 aataacgcctccgcagctttccaaattactaaataccaattgttctgtagtagttatgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aataacgcctccgcagctttccaaattactaaataccaattgttctgtagtagttatgat 402

                                                                       
Query: 185 aaatcaagaacaatcactactctgtaggttacttatcatatagaatcattccctctgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaatcaagaacaatcactactctgtaggttacttatcatatagaatcattccctctgtgt 342

                                                                       
Query: 245 acttgtggatgagaaatccccaaatctgattatgactttgtaagttgctaccttaacaaa 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acttgtgggtgagaaatccccaaatctgattatgactttgtaagttgctaccttaacaaa 282

                                                                       
Query: 305 gtaatacattctagctctctacatgttaaatgctaacacataggcattgggatgctactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtaatacattctagctctctacatgttaaatgctaacacataggcattgggatgctactc 222

                                                                       
Query: 365 tacagttggagaaacgtagaagatgaaggaagagaagcaggaggaagatgagaaggagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tacagttggagaaacgtagaagatgaaggaagagaagcaggaggaagatgagaaggagaa 162

                                                                       
Query: 425 gaacagagtatgaaaaagttccctttctgatagtgagactttgagtagagtgtattaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gaacagagtatgaaaaagttccctttctgatagtgagactttgagtagagtgtattaaat 102

                                                                       
Query: 485 tacagatgacaatgaaacatttctggttttctaagaccaaagcataacataaaatgattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tacagatgacaatgaaacatttctggttttctaagaccaaagcataacataaaatgattt 42

                                      
Query: 545 agtaacaagactgattcaagaaattaa 571
           |||||||||||||||||||||||||||
Sbjct: 41  agtaacaagactgattcaagaaattaa 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_h02.g1 MSMg01no412_h02.g1 CHROMAT_FILE:
MSMg01no412_h02.g1 PHD_FILE: MSMg01no412_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:48 2005
         (474 letters)



>mm_chrX_84896007_84896880
          Length = 874

 Score =  893 bits (462), Expect = 0.0
 Identities = 471/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatttagggttccagaacatcttctctgagaattggagaaagtttagactgaataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatttagggttccagaacatcttctctgagaattggagaaagtttagactgaataaaa 260

                                                                       
Query: 61  tttgaaagttcttgactccttaagctttatgaaattgtaactatgcacctagcaacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgaaagttcttgactccttaagctttatgaaattgtaactatgcacctagcaacatca 320

                                                                       
Query: 121 acgtggataacaccctaaaaacttgacaaaataatgaaaaaaattaataaatacagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtggataacaccctaaaaacttgacaaaataatgaaaaaaattaataaatacagttat 380

                                                                       
Query: 181 aaacaaataatctaattaatacattaaacattgacacatggcataaataatatggttaag 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aaacaaataatctaattaatacattaaacattgacacgtggcataaataatatggttaag 440

                                                                       
Query: 241 agtcattcgtataattgtgagtgaggtaacccaatcacaaaagtacacacatgatatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcattcgtataattgtgagtgaggtaacccaatcacaaaagtacacacatgatatgga 500

                                                                       
Query: 301 ctcactgataagtggatattagcccagaaacttagaatacctaagatataatttgcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ctcactgataagtggatattagcccagaaacttagaatacccaagatataatttgcaaaa 560

                                                                       
Query: 361 cacatgacactcaagaagaaggaagaccaaggtgtgcatatttcattccttcttagaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacatgacactcaagaagaaggaagaccaaggtgtgcatatttcattccttcttagaatg 620

                                                                 
Query: 421 gggaacaaaatacccatgaaaggagttacagagacaaagtttggagctgagaca 474
           || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaacaaaatacccatgaaaggagttacagagacaaagtttggagctgagaca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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