BAC Information

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BAC

Clone NameMSMg01-412P10
ChromosomeX (Build37)
Map Location 156,918,332 - 156,918,645
singlet/doubletsinglet
Overlap geneGpr64
Upstream geneMtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427
Downstream genePhka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412P10.T7 (MSMg01no412_p10.b1)MSMg01-412P10.TJ (MSMg01no412_p10.g1)
ACCAG509608AG509609
length742756
length of high quality
(start - end)
470 (157 - 626)454 (77 - 530)
definitionCHROMAT_FILE: MSMg01no412_p10.b1 PHD_FILE: MSMg01no412_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:30 2005CHROMAT_FILE: MSMg01no412_p10.g1 PHD_FILE: MSMg01no412_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGATGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAATTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTACCCATACCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGGGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GTTCTGTATTAAAGTTTTAAGCCAGGCATGTTGATTCCACCAGAGGTTCT
TTTATCCTTTGAAATAGTTTTTGCTATCCTATTTTTCTTGTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATGAAAATACCATTCCCTGC
CATATACCACACACACACACACACACACACACACACACACACACACACAC
TTTCCACTATCCAGTTACAAAAGGGTTCACATGGGCACAAAAATCTCTAG
TCAAATTATGTATTTTTCTGAATGCTGGGGGTTGAATCCAGGGCCTCATG
CACACTAAACATGCCCTATGCCACTGAGTCCCATCTCAGCTTTCAAAACC
CATGTCATTTTTTTTTATTCTGTTTTATCTCACTGGCTACTCTGTATACC
AGGCTGGCCTTGAACTCATAGTTCCACCTGCCATCACCTCCTGAGTGATA
GACTTAAAGGAGTCAAATATTAAATCTTCTGAATAGTAAATATCACTCCT
GATAATCAACAGTAATTGCCTCCATCAGGAAGCACAGCGGGAGCTCCAAT
TGTGCACCAGAAAATGTTGTTTCTATAAGAAATTAGATTGTTGTACCTGG
AGATTTGCTGGGTCTTGGGCCGCAAAAGTCGTGGTATTGAAATTACTGGC
ATTCACTCTGATCACAGCAAGAGCCAAAGAAAGTGAAGTTAGACTGATAG
TTGTAGATGAAAAATTCAGCTGCAAGCCAATGGGATCCTACCACTTCTAC
CCACCTGTAAAGACAGGTGGAAGGTCCAAATTTAACCCCTCCGGTTTCCC
CCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_p10.g1 MSMg01no412_p10.g1 CHROMAT_FILE:
MSMg01no412_p10.g1 PHD_FILE: MSMg01no412_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:30 2005
         (454 letters)



>mm_chrX_156917792_156918645
          Length = 854

 Score =  404 bits (209), Expect = e-117
 Identities = 283/335 (84%), Gaps = 45/335 (13%)
 Strand = Plus / Minus

                                                                       
Query: 144 gaatgctgggggttgaatccagggcctcatgcacactaaacatgccctatgccactgagt 203
           ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 854 gaatgctgggggttgtatccagggcctcgtgcacacaaaacatgccctatgccactgagt 795

                                                                       
Query: 204 cccatctcagctttcaaaacccatgtcattt--------------------tttt----t 239
           |||||||||||||||||||||||||||||||                    ||||    |
Sbjct: 794 cccatctcagctttcaaaacccatgtcattttattattattattattattattttattat 735

                                                                       
Query: 240 tattctgttttatctcactggctactctgtataccaggctggccttgaactcatagttcc 299
           ||||||||  ||||||||||||         |||||||||||||||||||||| ||||||
Sbjct: 734 tattctgtggtatctcactggc---------taccaggctggccttgaactcagagttcc 684

                                                                       
Query: 300 acctgccatcacctcctgagtgatagacttaaaggagtcaaatattaaatcttctgaata 359
           |||||||||||||||            ||||||||||||| |||||||||||||||||||
Sbjct: 683 acctgccatcacctc------------cttaaaggagtcagatattaaatcttctgaata 636

                                                                       
Query: 360 gtaaatatcactcctgataatcaacagtaattgcctccatcaggaagcacagcgggagct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtaaatatcactcctgataatcaacagtaattgcctccatcaggaagcacagcgggagct 576

                                              
Query: 420 ccaattgtgcaccagaaaatgttgtttctataaga 454
           |||||||||||||||||||||||||||||||||||
Sbjct: 575 ccaattgtgcaccagaaaatgttgtttctataaga 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)