Query= MSMg01no413_n20.b1 MSMg01no413_n20.b1 CHROMAT_FILE:
MSMg01no413_n20.b1 PHD_FILE: MSMg01no413_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:41 2005
(686 letters)
>mm_chrX_133982871_133983955
Length = 1085
Score = 1280 bits (662), Expect = 0.0
Identities = 680/686 (99%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 1 accactattttggctttagtgaaatattctcatcattccacactagagtcttgtccttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accactattttggctttagtgaaatattctcatcattccacactagagtcttgtccttca 260
Query: 61 tcccttccaggctcctcctaagcctcttattatgggattggtattttaacattaattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttccaggctcctcctaagcctcttattatgggattggtattttaacattaattctt 320
Query: 121 cactgtagcatcttatcctacagatctcatataactcaaaatctaagaaatatctccaga 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cactgtagcatcttatcctacagatctcacataactcaaaatctaagaaatatctccaga 380
Query: 181 agtagataggttctaacataatttattcattgtgtgggaatattttgaagttactatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagataggttctaacataatttattcattgtgtgggaatattttgaagttactatgta 440
Query: 241 gcctgtaagccttttcaggagtactgtctgactactctaaagatccttagaataatatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctgtaagccttttcaggagtactgtctgactactctaaagatccttagaataatatgt 500
Query: 301 tataacattcctatttcaaagtataaaatattagaagttatagatgctattactaaaata 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tataacattcctatttcaaagtataaaagattagaagttatagatgctattactaaaata 560
Query: 361 atttactccataaagaatagggagttaaggtctttgatgtgcatccagaaagccttttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttactccataaagaatagggagttaaggtctttgatgtgcatccagaaagccttttga 620
Query: 421 acctgcctagcataatatatgaggtaagatgccatttttctataacggattaagtattga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctgcctagcataatatatgaggtaagatgccatttttctataacggattaagtattga 680
Query: 481 ggatgctcctggataaaactattttaaataccacaacaaaaaatggactcaaattctttt 540
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ggatgctcctggataaaactattctaaataccacaacaaaaaaaggactcaaattctttt 740
Query: 541 ctttttttcaaattttaattccatttcagaaacattgacatacaattacttgctactgga 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttttt-caaattttaattccatttcagaaacattgacatacaattacttgctactgga 799
Query: 601 ctagagcttgtctacatgtgaaaccactttttgaagtgtattatctactaatattatcat 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 800 ctagagcttgtctacatgtgaaactactttttgaagtgtattatctactaatattatcat 859
Query: 661 agagtattttctggagggggaaaacg 686
||||||||||||||||||||||||||
Sbjct: 860 agagtattttctggagggggaaaacg 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1085
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1075
Effective search space: 726700
Effective search space used: 726700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_n20.g1 MSMg01no413_n20.g1 CHROMAT_FILE:
MSMg01no413_n20.g1 PHD_FILE: MSMg01no413_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:41 2005
(558 letters)
>mm_chrX_134186212_134187163
Length = 952
Score = 971 bits (502), Expect = 0.0
Identities = 543/560 (96%), Gaps = 8/560 (1%)
Strand = Plus / Minus
Query: 1 catacagatatggagagctcactgacatttttccaaaacatctcttcaaaccatattgtt 60
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 579 catacagatatggagagctcactgatatttttccaaaacaactcttcaaaccatattgtt 520
Query: 61 gtatattgaattagaacgtaaattatatgtagtttttaaagttttcctctcttctaattt 120
|||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 519 gtatatggaattagaacacaaattatacgtagttttaaaagttttcctctcttctaattt 460
Query: 121 ataaatgtttgctcccaggtggttactcaccagtaaatgtaaccaactgtaaatagccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ataaatgtttgctcccaggtggttactcaccagtaaatgtaaccaactgtaaatagccct 400
Query: 181 ttcatattttgttgtccactgagagtatgctggccattgaattttaacaaacttctactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcatattttgttgtccactgagagtatgctggccattgaattttaacaaacttctactg 340
Query: 241 gtttcccaactttttctcagtggtaagcaacaaacttcatttttactttggctgctttcc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtttcccaactttttctcggtggtaagcaacaaacttcatttttactttggctgctttcc 280
Query: 301 aatggagctagaatataagagcttctatttaaagacatccctatttaaatacataggtga 360
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatg----t--aatataagagcttctatttaaagacatccctatttaaatacataggtga 226
Query: 361 cctatgaatgctc--aaaaaaaaaaaaccaaacaaacaaacaaacaaaaaactccgcaca 418
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cctatgaatgctcaaaaaaaaaaaaaaccaaacaaacaaacaaacaaaaaactccgcaca 166
Query: 419 ctttggccatatagcaggaagtcaccagcaacataccagaatttctttttgacaccatct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ctttggccatatagcaggaagtcaccagcaacataccagaatttctttttgacaccatct 106
Query: 479 tcaaatctgtactgactgcagaacagaccaccagggccagaagaagtggcagcttcattg 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tcaaatttgtactgactgcagaacagaccaccagggccagaagaagtggcagcttcattg 46
Query: 539 ttcaagttctctggcagctg 558
||||||||||||||||||||
Sbjct: 45 ttcaagttctctggcagctg 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 952
Length adjustment: 10
Effective length of query: 548
Effective length of database: 942
Effective search space: 516216
Effective search space used: 516216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
