BAC Information

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BAC

Clone NameMSMg01-415L08
ChromosomeX (Build37)
Map Location 75,651,629 - 75,840,489
singlet/doubletdoublet
Overlap genePrrg1
Upstream geneLOC546331, LOC100041212, Tbl1x, EG628893, LOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672
Downstream geneLOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415L08.T7 (MSMg01no415_l08.b1)MSMg01-415L08.TJ (MSMg01no415_l08.g1)
ACCAG511703AG511704
length740742
length of high quality
(start - end)		454 (45 - 498)433 (74 - 506)
definitionCHROMAT_FILE: MSMg01no415_l08.b1 PHD_FILE: MSMg01no415_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:10 2005CHROMAT_FILE: MSMg01no415_l08.g1 PHD_FILE: MSMg01no415_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,840,040 - 75,840,489)(75,651,629 - 75,652,061)
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGAATTACATGAAAATTTAAGAAATTCAATCTCTATATAAATTAC
AGTTACAGTTATATAACAAATCTCTTTATTATGAAACCAAAAGAAACTTT
TTACATTCTTCTAATTCAATAAATGTATTTTCTTTAAAAACTTTCATACC
ATCAGAATACTGGGGGAATAGCATAATGAACTATAATCCAGATTCTACCA
ATACCAAGTAAGGTTACTTGCCTTATTATATCTGTCCAGCTACCCATTTC
TCCTTTCTTTCTCTATTTTTTTTTTTGAGTTTTGTATGTGAACTATCCCC
CAAAGATTTAAGTACTTGAGAATTTTTCACATTGTGGTAGTATAAGAGGT
GATAAAAACAACCATTAGGTATGACCTCAGGATGGAGTAATGCAATTCTC
CTAAGACCCAGCCTAGTTTTCTAATGGATTGATATATAGCATAATCTTGG
CCCCAGAATGCCTATAGATTTGTTTTTTATCGTGTGGCAGCTTATTTTTC
ACATGTGGTTTGATTAAGATGGGACGTGCTATGTTTTGCCCCGTCAACAG
GCCCCTTCACATAAAAACTCCTGAAACTCCTTCGATGGTGTGCACATTTC
CCTCCCCTTCCCTTTTTTTATTTTTCCCTTTTCTTTATTGCTATCTCTCC
TCCGTCCTTCTTTTTCCACTCGTTCTCTTTCCCCTCTTTN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTACTTACATGTCTCATCGAAACACCA
GAACAAACATCAAAAGGAAGACATTTAAAGTTGATATTTTATCAAAAGTA
GAGAAAATTAAAGGAGAGCAAGAATCTCATAGCCTGTCTGCACATTTGCA
ACTTACATTTACTGATTTCTTTCACAAAAATAATAAGCCATCACAAAACT
CAGAAAATGAACAAAATTCTGTTACCCTGAAAGTCTTGCTTGTGAAAGTT
TGCCACAATAAAGAAAGGTTTTAAGTTGTCCAGTAAGACAAGTTTCTATG
TTGGGAGCTGTTAAGATAACACTATTGTCCTGATCTCTGAATTGGGCCTC
TTCCCCCGAGAAGAAAAGAGGGTCAAAAGCGGGCCACCAACACACCGCTC
TGAGAACAACCACAGATTGTTCCAGCCCTAAGTCAGCGCTGGATGTCCTG
ACCTCAAGATACCCTGATACCGCCAAGTTCCTGCTTTCCCATGTAACTGT
CCAAGAATGTGCCATTCTATTGCCCCCCTCCCACTGACAAGTACCTCCCC
CTTCTGCTTGAATCGGCCCCATCCCCTCCCCTGCATAAAAATCCGTACTC
CTTCCTTCTTCTTCGTGAAATCCTTCTGCCTCTCCCCTTCTCGTTGAATG
GTGATTCTCCTTTTTCCTTTGTCCTTCTATCCCCTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_l08.b1 MSMg01no415_l08.b1 CHROMAT_FILE:
MSMg01no415_l08.b1 PHD_FILE: MSMg01no415_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:10 2005
         (454 letters)



>mm_chrX_75839836_75840689
          Length = 854

 Score =  801 bits (414), Expect = 0.0
 Identities = 441/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaattacatgaaaatttaagaaattcaatctctatataaattacagttacag 64
           |||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 654 gaattcctgaacaatatgaaaatttaagaaattcaatctctatataagttacagttacag 595

                                                                       
Query: 65  ttatataacaaatctctttattatgaaaccaaaagaaactttttacattcttctaattca 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 594 ttatataacaaatctctttattatgaaaccaaaaaaaactttttacattcttctaattca 535

                                                                       
Query: 125 ataaatgtattttctttaaaaactttcataccatcagaatactgggggaatagcataatg 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 534 ataaatgtattttctttaaaaactttcataccatcagaatattgggggaatagcataatg 475

                                                                       
Query: 185 aactataatccagattctaccaataccaagtaaggttacttgccttattatatctgtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aactataatccagattctaccaataccaagtaaggttacttgccttattatatctgtcca 415

                                                                       
Query: 245 gctacccatttctcctttctttctctatttttttttttgagttttgtatgtgaactatcc 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gttacccatttctcctttctttctctatttttttttttgagttttgtatgtgaactatcc 355

                                                                       
Query: 305 cccaaagatttaagtacttgagaatttttcacattgtggtagtataagaggtgataaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cccaaagatttaagtacttgagaatttttcacattgtggtagtataagaggtgataaaaa 295

                                                                       
Query: 365 caaccattaggtatgacctcaggatggagtaatgcaattctcctaagacccagcctagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caaccattaggtatgacctcaggatggagtaatgcaattctcctaagacccagcctagtt 235

                                         
Query: 425 ttctaatggattgatatatagcataatctt 454
           ||| ||||||||||||| ||||||||||||
Sbjct: 234 ttccaatggattgatatgtagcataatctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no415_l08.g1 MSMg01no415_l08.g1 CHROMAT_FILE:
MSMg01no415_l08.g1 PHD_FILE: MSMg01no415_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:10 2005
         (433 letters)



>mm_chrX_75651429_75652261
          Length = 833

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacttacatgtctcatcgaaacaccagaacaaacatcaaaaggaagacatttaaagttg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacttacatgtctcatggaaacaccagaacaaacatcaaaaggaagacatttaaagttg 260

                                                                       
Query: 61  atattttatcaaaagtagagaaaattaaaggagagcaagaatctcatagcctgtctgcac 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 atattttaacaaaagtagagaaaattaaaggagagcaagaatctcatagcccgtctgcac 320

                                                                       
Query: 121 atttgcaacttacatttactgatttctttcacaaaaataataagccatcacaaaactcag 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atttgcaacttacatttactgatttctttcacaaaaataataagccatgacaaaactcag 380

                                                                       
Query: 181 aaaatgaacaaaattctgttaccctgaaagtcttgcttgtgaaagtttgccacaataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgaacaaaattctgttaccctgaaagtcttgcttgtgaaagtttgccacaataaag 440

                                                                       
Query: 241 aaaggttttaagttgtccagtaagacaagtttctatgttgggagctgttaagataacact 300
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aaagggtttaagttgtccagtaagacaagtttctatgttgggagttgttaagataacact 500

                                                                       
Query: 301 attgtcctgatctctgaattgggcctcttcccccgagaagaaaagagggtcaaaagcggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtcctgatctctgaattgggcctcttcccccgagaagaaaagagggtcaaaagcggg 560

                                                                       
Query: 361 ccaccaacacaccgctctgagaacaaccacagattgttccagccctaagtcagcgctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaccaacacaccgctctgagaacaaccacagattgttccagccctaagtcagcgctgga 620

                        
Query: 421 tgtcctgacctca 433
           |||||||||||||
Sbjct: 621 tgtcctgacctca 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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