BAC Information

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BAC

Clone NameMSMg01-415M12
ChromosomeX (Build37)
Map Location 42,319,386 - 42,319,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585
Downstream gene1110059M19Rik, LOC100040038, EG385346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415M12.T7 (MSMg01no415_m12.b1)MSMg01-415M12.TJ (MSMg01no415_m12.g1)
ACCAG511758AG511759
length722730
length of high quality
(start - end)
467 (71 - 537)249 (316 - 564)
definitionCHROMAT_FILE: MSMg01no415_m12.b1 PHD_FILE: MSMg01no415_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:15 2005CHROMAT_FILE: MSMg01no415_m12.g1 PHD_FILE: MSMg01no415_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGACGCTATACGAATCACAATTCGAAGAGGATCCGCGGAATTCTC
TGTTCTCTTTTTCCAAAAGCCATATTTAAACAACTGGTATGCACATGGGC
TGTTTTATAACACTCTATCTTATGTTTTTGAAACACTCTTCTGACTCTTC
TTACTCAATGGAATCTTATTCCAGGCCTTGACAGCAAAGTATATTTTTCA
TATATAGCTATTACTTGATTGCATCCTATGTCGACATTTAGCCTTCTTCT
GCTACAATCTTCTATCATAATCTGATAACTCTGTTTGCTTGTTTGTTTCG
AGACATTGTTTCTGTGTTTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG
ACCAGGCTGGCCTTGAACTCAGAATTCTGCCTGCCTCTGCCTCCCAAGTG
CTGGGATTAAAGGCATGTGTCACCACGCCAGGCCCAAAAGGAGCGTCATT
GTTTCCCCAGGTTTCCAACTGGGGACATTTCATGCGTGAGGTAAACGTGA
TAACCCCTACACTACTGAAACAATATTGTTGATAACTCTTAAATAGCTGT
TTGTCCCATCATGATTACATGATCCACGAATTAACAGATTAGAATTAAAA
AGTTTACACTAGCACAAGTTTCATATAACATTTAAACTTGTCCAGGAATA
ATCCTCTAACATCTACATCTTATATTTCCCCACTAAAGACATACAGCTAT
ACTTCTCCCAATGTCTATTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATCCTGTTTTCCAGAAAAAAATCAAAAGAG
AAAAGCAAGAAAGAGCAGCTAAAGCTACAAAGCACTTAAATATCGATGCT
TTATTGGAAAAAGAAACCTCAACTACCACTTTCAGTGCCCCTCCATGCCC
TCAGTGCAAAACCTTTCTTAAGCACTGTCTCTCCTCTTAATTGACAAATG
TGTTTTGTTTCTTCCACAGTTGAGCAAAATATTCCCAAGACACAATAATC
TAATCAAATTTGTGAGAATTGATAACAACAACAACAAAATTAGCTGTCAC
TCACATCATAAGGCTCTGTACTGCCTTTCTTGCTGTTTTTTTTTTTAATT
AGATGTTTTCTTTATTTTCATTACAAACATTATCCCCTTTCCTGGTTTCC
TCTCCCAAAACGCCCTTTTCCATCCTTTTCCATCCTCCCTCCCCCTGGTC
ACCAACCCACCCCAGCCCCCACTCCTGCTTCCCCTGTCCTGTCATTCCCC
TACACTGGGACATAGAACCTTCATGGGACCAAGGGTCACTTCTTCCATTG
ATGACATTCCTGCTGTTTTAACTTCACCTTGCTTCTTTGGTCCCTCGTCC
ATTTCCCGGTGAAACTTTCCAATCCCCCCTCCCTAAAATTCAACGTATAA
TGACCAAAATTTATGAAACCTTTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_m12.b1 MSMg01no415_m12.b1 CHROMAT_FILE:
MSMg01no415_m12.b1 PHD_FILE: MSMg01no415_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:15 2005
         (467 letters)



>mm_chrX_42319386_42320252
          Length = 867

 Score =  758 bits (392), Expect = 0.0
 Identities = 411/418 (98%), Gaps = 2/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttaaacaactggtatgcacatgggctgttttataacactctatcttatgtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 catatttaaacaactggtatgcacatgggctgttttataacactctatcttatgtttttg 359

                                                                       
Query: 61  aaacactcttctgactcttcttactcaatggaatcttattccaggccttgacagcaaagt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aatcactcttctgactcttcttactcaatggaatcttattccaggccttgacagcaaagt 299

                                                                       
Query: 121 atatttttcatatatagctattacttgattgcatcctatgtcgacatttagccttcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atatttttcatatatagctattacttgattgcatcctatgtcgacatttagccttcttct 239

                                                                       
Query: 181 gctacaatcttctatcataatctgataactctgtttgcttgtttgtttcgagacattgtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||
Sbjct: 238 gctacaatcttctatcataatctgataactctgtttgcttgtttgttttgagacagggtt 179

                                                                       
Query: 241 tctgtgtttagccctggctgtcctggaactcactttgtagaccaggctggccttgaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tctgtgtttagccctggctgtcctggaactcactttgtagaccaggctggccttgaactc 119

                                                                       
Query: 301 agaattctgcctgcctctgcctcccaagtgctgggattaaaggcatgtgtcaccacgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 agaattctgcctgcctctgcctcccaagtgctgggattaaaggcatgtgtcaccacgcca 59

                                                                     
Query: 361 ggcccaaaagg--agcgtcattgtttccccaggtttccaactggggacatttcatgcg 416
           |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 58  ggcccaaaaggaaagcgtcattgtttccccaggtttccaaccggggacatttcatgcg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)