Query= MSMg01no416_a23.b1 MSMg01no416_a23.b1 CHROMAT_FILE:
MSMg01no416_a23.b1 PHD_FILE: MSMg01no416_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:36 2005
(626 letters)
>mm_chrX_117237567_117238591
Length = 1025
Score = 1123 bits (581), Expect = 0.0
Identities = 611/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagacattttgcatagaatttccagtttttgttttcttagaaacagatgcacca 63
||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagactttttggatagaattttcagtttttgttttcttagaaacagatgcacca 263
Query: 64 catattacaggataaaaagaatcttggtatgtcttggcaagatacatgatatgattcact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catattacaggataaaaagaatcttggtatgtcttggcaagatacatgatatgattcact 323
Query: 124 cctgacaactctctgactagtctagaaaataatatcatgcagttctgaacagatgagatc 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 cctgacaactctctgactagtctagaaaataatatcatgcagttctgaatagatgagatc 383
Query: 184 aagtcaatacaccaatatctacatttttttaggaagatcattagaacttcaataacagtt 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 384 aagtcaatacaccaatatctacatttttt-aggaagatcattagaacttcaataacattt 442
Query: 244 tttattgttctgtgtttgtaagaagcagagttgtatcacagatcatggagaatttgcctg 303
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 tttattgttctgtgtttgtaagaagcagaattgtatcacagatcatggagaatttgcctg 502
Query: 304 taaaagacatgcctccttaaacacttagtgtgactccccaacctttgtagactagtaata 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 taaaagacatgcctccttaaacacttagtgtgactccccaaccttggtagactagtaata 562
Query: 364 atgtcagatatgtaattattatttgaaagtaaaatgtatataaatatcttctgtgtttga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgtcagatatgtaattattatttgaaagtaaaatgtatataaatatcttctgtgtttga 622
Query: 424 gcacttggtcatcagcttatggcacagtctttggcagttttgaaatctttatgtgatgag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcacttggtcatcagcttatggcacagtctttggcagttttgaaatctttatgtgatgag 682
Query: 484 acctggctggcatatgtggcttgttgtagggaagtattgagcctggcactactcctagac 543
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 683 acctggctggcatatgtggcttgttatagggaagtattgagccgggcactactcctagac 742
Query: 544 taattgctttgtgtctttgtctgcaattgtatgtggcaaaccacctcatatccctattac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 taattgctttgtgtctttgtctgcaattgtatgtggcaaaccacctcatatccctattac 802
Query: 604 tataactgccacacttataac 624
|||||||||||||||||||||
Sbjct: 803 tataactgccacacttataac 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space: 625240
Effective search space used: 625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_a23.g1 MSMg01no416_a23.g1 CHROMAT_FILE:
MSMg01no416_a23.g1 PHD_FILE: MSMg01no416_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:36 2005
(492 letters)
>mm_chrX_117400572_117401462
Length = 891
Score = 930 bits (481), Expect = 0.0
Identities = 489/492 (99%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 taactatgaaagaactgataagaaccttgcatttcctgcagagagaaggaccctccgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 taactatgaaagaactgataagaaccttgcatttcctgcagagagaaggaccctccgtga 632
Query: 61 ctaaatgaatttatggactgtctgcattattaaatagttctattaatcctcaaaaactac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctaaatgaatttatggactgtctgcattattaaatagttctattaatcctcaaaaactac 572
Query: 121 ttcttgagatagatattatgagcttctcaagtaaggaaataagaatacataaaaatgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttcttgagatagatattatgagcttctcaagtaaggaaataagaatacataaaaatgcct 512
Query: 181 aaggtgttatagctataaaatctagagttggaaaacccaagcttgtactgtttataatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaggtgttatagctataaaatctagagttggaaaacccaagcttgtactgtttataatac 452
Query: 241 tgtttgttctccattaacatatggtttcaggttgtgtgatggtagcttatcaaaatgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgtttgttctccattaacatatggtttcaggttgtgtgatggtagcttatcaaaatgtaa 392
Query: 301 attctataagaaatcttacaattaacaaagatttcaaaagtcaaaaggacactctgccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attctataagaaatcttacaattaacaaagatttcaaaagtcaaaaggacactctgccaa 332
Query: 361 tgtgttgttacaagaaatgatatggagcaactatggtatttattgcattttttttctgtg 420
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 331 tgtgttgttacaaaaaatgatatggagcaactatggtatttattgca-tttttttctgtg 273
Query: 421 ttccaattaggagcctgaacgataattccactatgcatataanagtatggttatgataat 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 272 ttccaattaggagcctgaacgataattccactatgcatataaaagtatggttatgataat 213
Query: 481 atatatcttgta 492
||||||||||||
Sbjct: 212 atatatcttgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
