Query= MSMg01no417_a20.b1 MSMg01no417_a20.b1 CHROMAT_FILE:
MSMg01no417_a20.b1 PHD_FILE: MSMg01no417_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:49 2005
(574 letters)
>mm_chrX_163315474_163316447
Length = 974
Score = 1087 bits (562), Expect = 0.0
Identities = 568/570 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagggaatctaactgtttagaatgttcaccatgtcaaagatgaaaggagaggaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattcaagggaatctaactgtttagaatgttcaccatgtcaaagatgaaaggagaggaa 715
Query: 65 agggctggctgaggctgttgagggccccaacatcagagcataaagaaccttaaatgactc 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 714 agggctggctgaggctgttgagggccccaacatcagaacataaagaaccttaaatgactc 655
Query: 125 tagaagatatagagaccagaggatttggcaggtattgggtttaaatagaattgtgtcttc 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 654 tagaagatatagagaccagaggatttgacaggtattgggtttaaatagaattgtgtcttc 595
Query: 185 attattgtagtgactgatacattatgaaacaatccaaagaatagaggatagagtccttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 attattgtagtgactgatacattatgaaacaatccaaagaatagaggatagagtccttaa 535
Query: 245 ccatggtaatactgactgaatactgtaaataactagataagtaaaatattgctacttagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccatggtaatactgactgaatactgtaaataactagataagtaaaatattgctacttagg 475
Query: 305 tattaaatgtgtattgaaacttccaactaagaagtaacaactgtcctaagcatacaagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tattaaatgtgtattgaaacttccaactaagaagtaacaactgtcctaagcatacaagca 415
Query: 365 agcatgatattttgtggatatccaggtaagtgatcatggtagtccaagctacaatattaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agcatgatattttgtggatatccaggtaagtgatcatggtagtccaagctacaatattaa 355
Query: 425 gtctaagatttctcaatagtccaattgaagttgatggttgatgatatactttaccctgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtctaagatttctcaatagtccaattgaagttgatggttgatgatatactttaccctgtt 295
Query: 485 tgtgaacatgttatttcattttgttctgggggtcatggtgaacctaaccacaaaaatgac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgtgaacatgttatttcattttgttctgggggtcatggtgaacctaaccacaaaaatgac 235
Query: 545 tatggtattttcagcaatctggcaaaaaga 574
||||||||||||||||||||||||||||||
Sbjct: 234 tatggtattttcagcaatctggcaaaaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_a20.g1 MSMg01no417_a20.g1 CHROMAT_FILE:
MSMg01no417_a20.g1 PHD_FILE: MSMg01no417_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:49 2005
(442 letters)
>mm_chrX_163187029_163187870
Length = 842
Score = 820 bits (424), Expect = 0.0
Identities = 439/446 (98%), Gaps = 4/446 (0%)
Strand = Plus / Plus
Query: 1 atttttctcctaattggctcgtattggcatcatatagctggaggagcgagagaacagaag 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttctcctaattggcttgtattggcatcatatagctggaggagcgagagaacagaag 260
Query: 61 gtaaagagggaggctgctaagcttccatcttacatgaattctaatgacttgcgaaactag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaagagggaggctgctaagcttccatcttacatgaattctaatgacttgcgaaactag 320
Query: 121 ctctttacaaattaatgtcaccagactcattctggctcccttgggctccctgatccttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctttacaaattaatgtcaccagactcattctggctcccttgggctccctgatccttct 380
Query: 181 gatctctgtcaaaagaaattcggctcgatacagagaatacggtgtaataaagagaggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctctgtcaaaagaaattcggctcgatacagagaatacggtgtaataaagagaggcag 440
Query: 241 agttcattacagagggaagtggggcattttcaagggggaaagagagaaaggcagatctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttcattacagagggaagtggggcattttcaagggggaaagagagaaaggcagatctct 500
Query: 301 ctctctctctct----ttctctctctctctctctctctctctctctctcacacacacaca 356
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctctctctctctctttctctctctctctctctctctctctctctctcacacacacaca 560
Query: 357 cacacacacacacacagagagagagagagagagagagagagagagagagagagagagaga 416
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacacacacacacacacagagagagagagagagagagagagagagagagagagagaga 620
Query: 417 gagagaacatagtgggtggcgggagt 442
||||||||||||||||||||||||||
Sbjct: 621 gagagaacatagtgggtggcgggagt 646
Score = 91.6 bits (47), Expect = 1e-22
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 372 agagagagagagagagagagagagagagagagagagagagagagagagaga 422
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 546 agagagagagagagagagagagagagagaaagagagagagagagagagaga 496
Score = 91.6 bits (47), Expect = 1e-22
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 372 agagagagagagagagagagagagagagagagagagagagagagagagaga 422
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 548 agagagagagagagagagagagagagagagaaagagagagagagagagaga 498
Score = 89.7 bits (46), Expect = 4e-22
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 373 gagagagagagagagagagagagagagagagagagagagagagagagaga 422
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 gagagagagagagagagagagagagagagagaaagagagagagagagaga 500
Score = 83.9 bits (43), Expect = 2e-20
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 298 tctctctctctctctttctctctctctctctctctctctctctctct 344
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 626 tctctctctctctctctctctctctctctctctctctctctctctct 580
Score = 83.9 bits (43), Expect = 2e-20
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 296 tctctctctctctctctttctctctctctctctctctctctctctct 342
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 626 tctctctctctctctctctctctctctctctctctctctctctctct 580
Score = 81.9 bits (42), Expect = 8e-20
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 300 tctctctctctctttctctctctctctctctctctctctctctctc 345
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 626 tctctctctctctctctctctctctctctctctctctctctctctc 581
Score = 64.5 bits (33), Expect = 1e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 391 gagagagagagagagagagagagagagagagaa 423
|||||||||||||||||||||||||||||||||
Sbjct: 549 gagagagagagagagagagagagagagagagaa 517
Score = 64.5 bits (33), Expect = 1e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 313 ttctctctctctctctctctctctctctctctc 345
|||||||||||||||||||||||||||||||||
Sbjct: 627 ttctctctctctctctctctctctctctctctc 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 184
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 13
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
