AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCC
ATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACATTGCTCTG
TAGTAAAGCTTTAAGTCCGGGCTGGTGATTCCACCAGAGGGTCTTTTATT
CTTTGAGAGAGATTTTGCTATCCTAGATTTTTTGTTATTCCGAAGAATTT
TGCAAAGGTCCCTCCAATTCC

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCATTCTCCATTAAGGGGGTCTAAAA
CATAGGGAATAACTACAAGGATGCTATGATGACAAGGAATGAGTATTAGA
AAGTCCCAGCATCAGAGGCAGCAATGAGTGGTACAAGAATAGAATTTTCT
TAATTGTGTTGTGGGAATTGAGAACCAAACACCAAATGACCAATTGCAGC
ATACCTGTCTTCTCTGCACTCCTTTCTCTATTTTCAACTTGTCTCAGAGT
ACAAACCAGATGCCCCGTGTGTCAGTCAGCTTTATTGCAGTAACAACCAG
TCCCAAACTCTCAGGTGGATTGGAATAATTTTTTTTGTTTTGTTAGCTGC
TAAGATAGATGGATCTGTTATGAGATGTAAATTAGCTTTGTACATTTTCT
TATTTTGGGGTGCAGGCTAAAGCAGTATCCTTGATTCAGAAGATGTTAAT
GTAGGCTTAGATTTTTTAAAACCTACTTTTAATAAGGGTTCTTAAATGCG
TTTACCTTCCTTATAGCACACCACCCACCATAGATAGTGGAAAGGAAAGG
TTATTACAGAAAACACGGAATTGGACCTTTTTAAAAATATTTTTTTGGAG
AATTCCATCTCGGGTTGGCGAAGTATCCTCGCTTAGTTTTATGGTCCTTT
TTTTTCCCATGTTTTTTCTTATCCTTCCCCCCTATTCCCTCCCCCCTACT
TTTCTCCTTTCTTTCCGCTTTTCTTTTGTC

Query= MSMg01no417_b19.g1 MSMg01no417_b19.g1 CHROMAT_FILE:
MSMg01no417_b19.g1 PHD_FILE: MSMg01no417_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:53 2005
         (429 letters)



>mm_chrX_65797301_65798131
          Length = 831

 Score =  739 bits (382), Expect = 0.0
 Identities = 421/434 (97%), Gaps = 8/434 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatt-ctccattaagggggtctaaaacatagggaataactacaaggatgctatgatga 59
           |||||| || |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 631 ctcattcct-cattgagggggtctaaaacatagggaataactgcaaggatgctatgatga 573

                                                                       
Query: 60  caaggaatgagtattagaaagtccca-gcatcagaggcagcaatgagtggtacaagaata 118
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 572 caaggaatgagtattagaaagtcccaggc-tcagaggcagcaatgagtggtacaagaata 514

                                                                       
Query: 119 gaattttcttaattgtgttgtgggaattgagaaccaaacaccaaatgaccaattgcagca 178
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 513 gaattttcttaattgtgttgtgggaactgagaaccaaacaccaaatgaccaattgcagca 454

                                                                       
Query: 179 tacctgtcttctctgcactcctttctctattttcaacttgtctcagagtacaaaccagat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tacctgtcttctctgcactcctttctctattttcaacttgtctcagagtacaaaccagat 394

                                                                       
Query: 239 gccccgtgtgtcagtcagctttattgcagtaacaaccagtcccaaactctcaggtggatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gccccgtgtgtcagtcagctttattgcagtaacaaccagtcccaaactctcaggtggatt 334

                                                                       
Query: 299 ggaataatt-tt-tt-ttgttttgttagctgctaagatagatggatctgttatgagatgt 355
           ||| ||||| || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggagtaattattattatt-ttttgttagctgctaagatagatggatctgttatgagatgt 275

                                                                       
Query: 356 aaattagctttgtacattttcttattttggggtgcaggctaaagcagtatccttgattca 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 274 aaattagctttgtacattttcttattttggggtgcaggctaaagcagtatccttggttca 215

                         
Query: 416 gaagatgttaatgt 429
           ||||||||||||||
Sbjct: 214 gaagatgttaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 831
Length adjustment: 9
Effective length of query: 420
Effective length of database: 822
Effective search space:   345240
Effective search space used:   345240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)