TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCGGTTGTCAACTTTAGGGATACAACCTATCTGTTTTTAAATTTC
TGTTGTTAGAGGACAAAATTTTAGGAACAAGGGTAGCTAAAGGCCACATA
TGTGATACCTATATATGATAATATAGGTTTGTTTGTGGCTCCTGCTTGCT
GGTATACATAGATCCTAGAATATGTCAGTTGAATCACAGTCCTGTACTGA
GCCCCTTTTCCAAGTGTAAATAACTCCAATTTCAAACACTGTCTGTGCCT
AAAGAACTCAGTCGAAAAATCTTGCTTTCCAAGTTCTGTAATACTAGAAA
GAAGCAGCATGTGATGTGAATGATTTAAACTACTCTCAAGTGGCAATAAA
TAGTAGTACCTATGACTTATATAGCACCTTCTCTAGAGCAGACACTATTC
TAAGTACTTTCAAGAAGTTCAATTCTTTTCAACTTCACAAGAAATAATAT
TGTAGGTATTATTTCTCCTATTTTAGGAGAAAACTGAAGTGAAAAGACTG
GAAATGCCTTTCTCAAGATCATATAGCACGCAAATATCAGAAACAGAGAG
ATTGATCAATTTGCAGCGGCTTAAAATGAACTATGTAGATTGCAGGCAGC
ATTTTGTAATGCAACCAAACCAAACTGGGAAATGGGCAGCATATTTTCTT
TATCCCACACTTTCCCACTGATAATACTTTTCTATTACCTAGTAGCTTTC
CTTCCAG

TGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTATATATTGTTGGCGGTGATGAAAACATGGC
ACCATCTCTCAAGAGAAATAAAAATTAAAGATAAAAAGTGATACTGGTTT
GTTTTTTTATGTCCCCAAGGTCAATTTAGGGAAAGTTATTGGGGAAATTT
CCTTTTAAAAACCGGGGGTTTATAATTTCCCCCTTTTTTTTTTCCCCACC
AACGAGAAANCGATCCANAAGCTANACACCNCAACCCCCCCCCCCCTTTT
TTTTTGGAAAAAATTTTTTTTTTTTCTTAAAAAGGAAAAAAACACCCCCC
CCCCCAAGAAGGGTTTTTTTTTTCTTTGGGGGGGGGTTTGTCTTTTTTTT
TTTTTTTTAAAAAAAAACAAANCGCTTTTTTGCCGCCGCCCCCCCCCCTC
CTTACCAAAAAAAAAAAAATAACACGAGGAACCTTNCCCTCCCCCTATAT
CTTTCCTTCCTCCCCTATGAGTGGGGGTTTTTCTTCTTCTTTTTTTCCCT
TCCCTCCCCCNNNCCCCAAAACCAAACATTANAAACNAAAATTNTTTTTT
TTTTTTCTTTTCCCGCGCGCGAGCGGTTTGTCCTCTCTCTTTTACTAAAA
AAATAAAAACCCTTCCCCCTTTCCCCG

Query= MSMg01no417_c19.b1 MSMg01no417_c19.b1 CHROMAT_FILE:
MSMg01no417_c19.b1 PHD_FILE: MSMg01no417_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:59 2005
         (531 letters)



>mm_chrX_141621779_141622709
          Length = 931

 Score =  973 bits (503), Expect = 0.0
 Identities = 521/527 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcggttgtcaactttagggatacaacctatctgtttttaaatttctgttgtta 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 554 gaattcctcgggggtgaactttagggatacaacctatctgtttttaaatttcttttgtta 495

                                                                       
Query: 65  gaggacaaaattttaggaacaagggtagctaaaggccacatatgtgatacctatatatga 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 494 gaggacaaaattttaggaacaagggtagctaaatgccacatatgtgatacctatatatga 435

                                                                       
Query: 125 taatataggtttgtttgtggctcctgcttgctggtatacatagatcctagaatatgtcag 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taatataggtttgtttgtggcccctgcttgctggtatacatagatcctagaatatgtcag 375

                                                                       
Query: 185 ttgaatcacagtcctgtactgagccccttttccaagtgtaaataactccaatttcaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgaatcacagtcctgtactgagccccttttccaagtgtaaataactccaatttcaaaca 315

                                                                       
Query: 245 ctgtctgtgcctaaagaactcagtcgaaaaatcttgctttccaagttctgtaatactaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctgtctgtgcctaaagaactcagtcgaaaaatcttgctttccaagttctgtaatactaga 255

                                                                       
Query: 305 aagaagcagcatgtgatgtgaatgatttaaactactctcaagtggcaataaatagtagta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagaagcagcatgtgatgtgaatgatttaaactactctcaagtggcaataaatagtagta 195

                                                                       
Query: 365 cctatgacttatatagcaccttctctagagcagacactattctaagtactttcaagaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cctatgacttatatagcaccttctctagagcagacactattctaagtactttcaagaagt 135

                                                                       
Query: 425 tcaattcttttcaacttcacaagaaataatattgtaggtattatttctcctattttagga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcaattcttttcaacttcacaagaaataatattgtaggtattatttctcctattttagga 75

                                                          
Query: 485 gaaaactgaagtgaaaagactggaaatgcctttctcaagatcatata 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gaaaactgaagtgaaaagactggaaatgcctttctcaagatcatata 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)