NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTTTACACTTTAACTGATAATGTGTAGAAATACAGTTGGCT
TTAGTTATTTATCATGAATTCTGTAGCCTCATTGACTTTTTGTTTGGATA
TATCTTATTCTGAAGCTTACGTAGTGAGGTGGGAGCGTGTTCATTATAGG
GCTCCTAACAGCTTAGCTAATAATCCTTCAGATATGCACAAATTAAAGAT
GAAATCCTCTTTAGTCTCTCTGGAAGACACCAATAGGATCATTATTGAAT
GTCACATTTTAGTTTCAGTTTTTCTCTTGTGTATGAAAGAATTGATCTCA
GACCATTTCTCAAGTAATATATGCTCTAGCTATGCAGTGGCAATGTTACC
TTAAGTAAGGCTTCCCTGTTTGTACTTACAGGTTTTTCATTTCACTACTG
CCTACTACCAGATGTAATAGTTATGAGTGACAAGAGTTTGAGTCTTGTTT
TGTACAAAGGACATATTTAAGGCATTTTGTGTGCATTATCTCCAAAATTC
ACAGTAACCCTGCAAAGTAGATACTGTTTCCTCCTCATTTTACTGACACA
GAAACAGGTGCAAGTTAAATTTGCCTAAGGTCATTGAGGTACTTGCAATT
AAAGCTAGTGTTGTACCTATATGGCCTAAAGCTAGGACCCCAGTTTGTAA
TTGGCAAAAGTGCGGTTTTTCCCCTCCTTCCCCTTCTTTTG

NCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGTATTTATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTT
ATAACTGCTTCTATTTCTTTAGGGGATATGTGACTGTTTATAAAGGCAAC
TTGATCCTGATTCAACTTTGGCACCTGTTATCTGTCCAGAAATTTTTTTA
TTTTCTCCCCGCTTTTCCCCCTTGTTGATTAACTCCTTTTGCTAAAGTCC
TCCCTGTGCTTTCGCCTTTTTTTAGCATCTGTTTTACCTCTTCTTTCCC

Query= MSMg01no417_n11.b1 MSMg01no417_n11.b1 CHROMAT_FILE:
MSMg01no417_n11.b1 PHD_FILE: MSMg01no417_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:51 2005
         (518 letters)



>mm_chrX_158930643_158931560
          Length = 918

 Score =  934 bits (483), Expect = 0.0
 Identities = 507/515 (98%), Gaps = 1/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttt-tacactttaactgataatgtgtagaaatacagttggctttagttattt 63
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattcattttcaaaactttaactgataatgtgtagaaatacagttggctttagttattt 666

                                                                       
Query: 64  atcatgaattctgtagcctcattgactttttgtttggatatatcttattctgaagcttac 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 665 atcatgaattctgtagcctcattgactttttgtttggatacatcttattctgaagcttac 606

                                                                       
Query: 124 gtagtgaggtgggagcgtgttcattatagggctcctaacagcttagctaataatccttca 183
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 605 gtagtgaggtgggagtgtgttcattacagggctcctaacagcttagctaataatccttca 546

                                                                       
Query: 184 gatatgcacaaattaaagatgaaatcctctttagtctctctggaagacaccaataggatc 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gatacgcacaaattaaagatgaaatcctctttagtctctctggaagacaccaataggatc 486

                                                                       
Query: 244 attattgaatgtcacattttagtttcagtttttctcttgtgtatgaaagaattgatctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attattgaatgtcacattttagtttcagtttttctcttgtgtatgaaagaattgatctca 426

                                                                       
Query: 304 gaccatttctcaagtaatatatgctctagctatgcagtggcaatgttaccttaagtaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaccatttctcaagtaatatatgctctagctatgcagtggcaatgttaccttaagtaagg 366

                                                                       
Query: 364 cttccctgtttgtacttacaggtttttcatttcactactgcctactaccagatgtaatag 423
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 cttccctgtttgtacttacaggtttttcatttcactactgcctaccaccagatgtaatag 306

                                                                       
Query: 424 ttatgagtgacaagagtttgagtcttgttttgtacaaaggacatatttaaggcattttgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttatgagtgacaagagtttgagtcttgttttgtacaaaggacatatttaaggcattttgt 246

                                              
Query: 484 gtgcattatctccaaaattcacagtaaccctgcaa 518
           |||||||||||||||||||||||||||||||||||
Sbjct: 245 gtgcattatctccaaaattcacagtaaccctgcaa 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)